1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAATTTTTGGATAGTTCAAAGCTGAAAAGACACTTCCTGATTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattctatcccctcaatattctggtctgtgtgaaataagggttttccctccaaatccatttcttagcgtacaagatgagattggttgtctttctc...
species | Vitis vinifera |
transcript | Vv12s0035g00660.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAEST: gi|30125100|gb|CB910439.1|CB910439
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAEST: gi|110729446|gb|EE105404.1|EE105404
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTTTTGGATAGTTCAAAGCTGAAAAGACACTTCCTGATTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattctatcccctcaatattctggtctgtgtgaaataagggttttccctccaaatccatttcttagcgtacaagatgagattggttgtctttctc
- - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatga