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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAATAGTCTCATTGACAAAGGGCAGTTTTGGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATGgtacgctgtgagtcttactgttgctaatttatcgtcttatagctgatttagagtttcttttttgtctgaaagagatttgcctttgcag

Basic information

species Vitis vinifera
transcript Vv12s0034g01410.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g01410.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G19760.1 (Glycine max), 5'ss of exon 4
ATTAATAGTCTCATTGACAAAGGGCAGTTTTGGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATGgtacgctgtgagtcttactgttgctaatttatcgtcttatagctgatttagagtttcttttttgtctgaaagagatttgcctttgcag
|| |||||||| ||||||||||| ||  ||||||| || || || ||||||||||||||||| || || || || ||  ||||  | |   ||| | | ||||   | ||| |  | ||||  ||| |||    ||   | ||    |   | | |||   || |||||
ATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGgtcggattctagt-taattgtttgaagtttgttttgttatgcctggtttgc--ttagatcttaaattactacaaatt---ctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390451|gb|EC955360.1|EC955360
EST:     GGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATG                         GTTAATTGTTTCTCTTTGAATTCTGTTGGTCCTACAGTGGAGAATCTCAGT
genomic: GGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATGgtacgctgtg ... gcctttgcagGTTAATTGTTTCTCTTTGAATTCTGTTGGTCCTACAGTGGAGAATCTCAGT
EST: gi|71874585|gb|DT023640.1|DT023640
EST:     GGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATG                         GTTAATTGTTTCTCTTTGAATTCTGTTGGTCCTACAGTGGAGAATCTCAGT
genomic: GGAGGCTGGCTACATCTTCCTTTTTGCATGCAAATATTGGGCATCTGATGgtacgctgtg ... gcctttgcagGTTAATTGTTTCTCTTTGAATTCTGTTGGTCCTACAGTGGAGAATCTCAGT