Sequence
atgc intronic sequence ATGC exonic sequenceTCTGAGCCGATACCAGTTGGCTGAATTTGAGCTTTGCGTCCTCGGCAACCTCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcatttggactcaacatgtggctttccagctgtgtgtatttgatatttgctggtttaaaaatatgctagatagacattcattgaatcttccatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G09890.1 (Glycine max), 5'ss of exon 5
TCTGAGCCGATACCAGTTGGCTGAATTTGAGCTTTGCGTCCTCGGCAACCTCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcatttggactcaacatgtggctttccagctgtgtgtatttgatattt--gctggtttaaaaatatgctagata-gacattcattgaatcttccatc
| || ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| | || | || | | | ||| | || | |||| | ||| | || | | || || | || || ||| || |
-------------------------------TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAGgtaaaaatagtttgcttctccctct---ttttgtattaggtatgtttggtttttttgggggatgattttcattctctctttgatgtttattaaactgaactag
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G32260.1 (Glycine max), 5'ss of exon 5
TCTGAGCCGATACCAGTTGGCTGAATTTGAGCTTTGCGTCCTCGGCAACCTCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcatttggactcaacatgtggctttccagctgtgtgtatttgatatttgctggtttaaaaat-atgctagata-gacattcattgaa-tcttccatc
| || ||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| | || | || | | ||| | || |||| | ||| || | | || || | || || || || | | |
-------------------------------TTGTGTGTCCTTGGCAACCTTTGCCCAGAAACTGTGGAGGAAGCTATTGCTATGGTTCCATCTATCAAGgtaaaaataatttgcttctctctat---ttttgtattaggtaagtttggtttttttgggaatgatttccattctctctttgatgtttgttaaaatgaactagg
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G22220.1 (Glycine max), 5'ss of exon 5
TCTGAGCCGATACCAGTTGGCTGAATTTGAGCTTTGCGTCCTCGGCAACCTCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcatttggactcaacatgtggct-ttccagctgtgtgtatttgatatttgctggtttaaaaatatgctagata-gacattcattgaatcttccatc
| || ||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || | || | | | | | || | || | || | |||| || | | || || | || | || || |
-------------------------------TTGTGTGTCCTTGGAAACCTTTGCCCGGAAACTGTGGAGGAAGCTATTGCCATGGTTCCATCTATCAAGgtaaaaatgatttgcttccccctctctttgtattaggtatgcttggtttttttttgggggatgattttcattctctctttgatgcttgttaaaatgaact--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419235|gb|EC985447.1|EC985447EST: TCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAG ACGAAAGGCCGGGCCCATGATGATGAAGCAATTGAGAAAATGTTGAATGAC
genomic: TCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcat ... tgtcatgcagACGAAAGGCCGGGCCCATGATGATGAAGCAATTGAGAAAATGTTGAATGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGAGCCGATACCAGTTGGCTGAATTTGAGCTTTGCGTCCTCGGCAACCTCTGCCCCGAAACTGTGGAAGAAGCTATTGCCATGGTTCCATCCATCAAGgtaaattcatttggactcaacatgtggctttccagctgtgtgtatttgatatttgctggtttaaaaatatgctagatagacattcattgaatcttccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata