Sequence
atgc intronic sequence ATGC exonic sequenceCATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatgaatctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggtcatgctaatatgactcagttcaagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G38350.2 (Glycine max), 5'ss of exon 4
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgta-tgaatctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggtcatgctaatatgactcagttcaagta-
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TATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAGgtaatagaaccttttgttctctttgcagtttgatactttttttctttaatgttattgcatctgagc-tcattgtgagtattt-cattgccaaacttgtgcca
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G29520.1 (Glycine max), 5'ss of exon 4
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatgaa---tctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggt-catgctaatatgactcagttcaagta
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TATGAATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTCGAGgtaaaagaactttttgttttctttgcagtttgatactttttttcttgtaaagttcatttgagctcattgtgagtatttcattgtcaaacttgttatgcca----
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G04630.1 (Arabidopsis thaliana), 5'ss of exon 4
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtat-gaatctttgtgaggtatgctggtctagaattttattttttccactctaata-gtattccagtgtctttggtcatgctaatatgactcagttcaagta
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CATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGgtgttgccttcttccttcttgttgtgtttttcatgatttgtcagtaaatgttgatatgtatatgaacatttgtgttgtttattgtatgatttggcttaag--
upper sequence: Vv12s0028g01210.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G51940.1 (Arabidopsis thaliana), 5'ss of exon 4
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatga--atctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggtcatgctaatatgactcagttcaagta
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CATGAATGCTCCTGTCATGGTTGAGCTAGAGGGTGAGACTGATCCACTTGAGgtgtgcttacctaccttcttgttgttggtttttgaagttatgtct----cagtaaacttatatgaacatttgagctaat-ttattatgatttggattcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112229|gb|JG391697.1|JG391697EST: ATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAG ATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGC
genomic: ATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatgaatct ... attgttttagATTGCGATGAAAGAACTTCGTGAGAGGAAGATACCCTTCACCATTCGGCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGAATGCGCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCACTTGAGgtatgaatctttgtgaggtatgctggtctagaattttattttttccactctaatagtattccagtgtctttggtcatgctaatatgactcagttcaagta
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - TGGAGG