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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTGAAATGGTGCTTCTCGATCTTCCTGGTCTTCTATTTTTCTCAACATATACATTACTTGTCTTGTTTTGGGCTGAAATATATCACCAGgtaatccttctttcattgttttgaaatatattccatttccagctaattgctatgtttaaatttattttcttatattttcatccttttctttttag

Basic information

species Vitis vinifera
transcript Vv12s0028g00460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G07670.2 (Glycine max), 5'ss of exon 4
GCACTTGAAATGGTGCTTCTCGATCTTCCTGGTCTTCTATTTTTCTCAACATATACATTACTTGTCTTGTTTTGGGCTGAAATATATCACCAGgtaatccttctttcattgttttgaaatatatt-----ccatttccagctaattgctatgtttaaatttat-tttcttatattttcatccttttctttttag
||||| ||   ||||||  | ||  ||||||||||||| ||||| || || |||||||||||||||||||| |||||||| |||||||||||||||    | ||||| ||     ||| || |||      |||||     |  ||| |||||   || |||| || | | ||| | | ||   |   ||| ||
GCACTAGAGCAGGTGCTAATGGAGGTTCCTGGTCTTCTGTTTTTTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttactttcttttgagagaactacattaacagtcattttt--tttgttgatatgtggtaagttatattccatttatgtgcctcaaatgtgtttcag

upper sequence: Vv12s0028g00460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G24420.1 (Glycine max), 5'ss of exon 4
GCACTTGAAATGGTGCTTCTCGATCTTCCTGGTCTTCTATTTTTCTCAACATATACATTACTTGTCTTGTTTTGGGCTGAAATATATCACCAGgtaatccttctttcattgttttgaaatatatt----ccatttccagctaattgctatgtt-taaatttattttcttatattttcatccttttctttttag
||||| ||   ||||||  | ||  |||| |||||||| ||||| || || ||| |||||||||||||||| |||||||| |||||||||||||||    | ||||| ||     ||| || |||    |   ||     |||||| | |||  ||||||   || | | ||| | | ||   |   ||| ||
GCACTAGAGCAGGTGCTAATGGAGGTTCCCGGTCTTCTGTTTTTTTCTACTTATGCATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttactttcttttgagagaactacattaacactcattttttttaattgatttgtggtaaattatattccatttatgtgcctcaaatgtgtttcag