Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttgatgctcagtaccttaattcattttttttttttcctgaaggaatatttttctttgtagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttgtttccacattgtaacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 5'ss of exon 4
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttga---tgctcagtacc-ttaattcattttttttttttcctgaaggaatatttttctttg---tagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttgtttccacattgtaacttcag
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GGCTGCTTACAAGGGATTTGCGGATTCTATACGTCTCCTTTTGTATTTGGATGCTTATAGGGGGCGGCAGGATAAAGAAGgcatgtgctaaatttatctatttccattattacctgtactgctgtgcacataacagtgtaaaccaatggcttagccatatctccaattatatc-agtacacttcagagcatgagatttacttctttactacaatgctgc--ccctag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g09130.1 (Oryza sativa), 5'ss of exon 4
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttga------tgctcagtaccttaattcattttttttttttcctga--aggaatatttttctttgtagaaactt---accattttatatctagaata-tctcat--attatcatcctcttgctcttgtttccacattgtaacttcag
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GGCTGCTTATAAAGGATTTGCAGATTCTGTACGCCTCCTTTTGTTTTTGGGTGCATATAGGGGGCGGCAAGATAAAGAAGgcacgtgtttagttagtttttctagctcttcctaaaccctatctttatactgatcatgacaatctaacctacaacaagcatttaagcacgcttcccctgcattagttttgttggatatcaaatattcatttccagctcaaatgcttttcattag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 5
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttgatgctcagtaccttaattcattttttttttttcctgaaggaatatttttctttgtagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttg-tttccacattgtaacttcag
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GGCTGCTTACAAAGGTTTTGCCGATTCTATACGTCTTCTGTTATTTCTTGATGCACACAGGGGACGTCAAGATAAAGAGGgtatgttctaatgctctat-cctgaactc--catgtattctccttaaattattcatgcactaaatgatgaaccgatctttgattttcaaagcat----tattctagttttatttttcttaatttattcag-----------
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 4
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttgatgctcagtaccttaattcattttttttttttcctgaaggaatatttttctttgtagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttgtttccacattgtaacttcag
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GGCTGCATACAAAGGTTTTGCCGATTCTATACGTCTTCTGTTATTTCTTGATGCACACAGGGGACGTCAAGATACGGGGGgtatgttctaatgctctat-cctgaactccatttattcccctc--aaattattcatgcactaaatgatgaattg--atctttgattttgaaagcattattctagt-ttttattttccttattcgttcag-----------
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgta--tgctttgatgctcagtaccttaattcattttttttttttcctgaaggaatatttttctttgtagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttgtttccacattgtaacttcag
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GGCTGCATATAAAGGTTTTGCAGATTCCATTCGCCTACTTTTATTTCTAGATGCATATAGAGGACGACAAGACAAAGAAGgtggttacaaacatattttttttttaaatcttctttgtttattttcttagattaactatacgtttctaacatcttctc-cgttatattga-------ttctgttatcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721152|gb|FC071027.1|FC071027EST: ACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGG GTTGTACGCCTCTCCATTGGGCTGCTATTAGGGGCAACTTAGAGGCATGCA
genomic: ACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttg ... gtaacttcagGTTGTACACCTCTCCATTGGGCTGCTATTAGGGGCAACTTAGAGGCATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGACGCATATAGGGGACGCCAGGATAAAGAGGgtatgctttgatgctcagtaccttaattcattttttttttttcctgaaggaatatttttctttgtagaaacttaccattttatatctagaatatctcatattatcatcctcttgctcttgtttccacattgtaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG