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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCAATATTTGGAGGCCCAAATGGCTGTAAATAATGATGAAGCTACAAAACAAATATTTAGCCGGTGTTTGTTGAATTGCTTTCAAATTCCTCTTTGgtatgtttttgcttttgctttaattgatatacctttgagtgatgaacctcatcactttttgtatatatcctgtatacttggaatgcactcgctttttgat...

Basic information

species Vitis vinifera
transcript Vv11s0065g00710.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0065g00710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 4
GGAGGCAATATTTGGAGGCCCAAATGGCTGTAAATAATGATGAAGCTACAAAACAAATATTTAGCCGGTGTTTGTTGAATTGCTTTCAAATTCCTCTTTGgtatgtttttgcttttgctttaatt--gatatacctttgagtgatgaacctcatcactttttgtatatatcctgtatacttggaatgcactcgctttttgat-
||||||||||| ||||||| || ||||||| |||||||||||| ||||||||||| || ||||| ||||| |||||||||||  |||| |||||||| |||||| || ||    ||   ||  ||  |  ||    | | ||  ||    |  | |||| || | ||||| |||| |  || |||||   |   |||   || 
GGAGGCAATATGTGGAGGCACATATGGCTGCAAATAATGATGATGCTACAAAACAGATTTTTAGTCGGTGCTTGTTGAATTGTCTTCAGATTCCTCTATGgtatattgtttgcattatcttgtttatggcattggctggtgtattgttagttgttacttatttt-tatatactgtctcttttgaatgtgttg--tttcaaatg

upper sequence: Vv11s0065g00710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGGCAATATTTGGAGGCCCAAATGGCTGTAAATAATGATGAAGCTACAAAACAAATATTTAGCCGGTGTTTGTTGAATTGCTTTCAAATTCCTCTTTGgtatgtttttgcttttgctttaattgatatacctttgagtga--tgaacctcatcactttttgt----atatatcctgtatacttggaatgca---ctcgctttttgat-------------------------------
||| ||||||| ||||||| || ||||||||||| |||||||| ||||| ||||| |||||||| || ||||||||||  ||| ||||| |||||||||||||      || |    ||||| | |   |   |  |||| |  | ||| || |  | | |  |       | || ||   |  || ||||||   || ||  | |  |                               
GGAAGCAATATGTGGAGGCACAGATGGCTGTAAACAATGATGATGCTACCAAACAGATATTTAGTCGTTGTTTGTTGACCTGCCTTCAAGTTCCTCTTTGgtaatgccatgttacc-ctttattagtcgttgataagagtcaatttaacatcttttcgtctcattgttgggtttcttgctcagctgcaatgcaagtcttgccatctccttggatataattctaacatcttattctctcag