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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAACgtgagttctggataatctttctttccttgcagttaatgaatcttagtttgtggactcccaatgatatatgatatgctgatgaacttgcttgtttatttcttcccccttccttttcactttatttctaatgtgag

Basic information

species Vitis vinifera
transcript Vv11s0065g00480.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396623|gb|EC962315.1|EC962315
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|71873337|gb|DT022392.1|DT022392
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110380311|gb|EC945566.1|EC945566
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110421110|gb|EC987398.1|EC987398
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110390962|gb|EC955912.1|EC955912
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110428276|gb|EC994743.1|EC994743
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110392562|gb|EC958071.1|EC958071
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
EST: gi|110414808|gb|EC980666.1|EC980666
EST:     CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC