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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaagtatgctcttgctgatttgaggattatttgatcaatcttctgtttgtcataatttctaaggcatccattcttccttctttattctgttaga...

Basic information

species Vitis vinifera
transcript Vv11s0052g01660.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 4
AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaagtatgctcttgctgatttgaggattatttgatcaatcttctgtttgtca-taatttctaaggcatccattcttccttctttattctgttaga
|      |   | |  |  |||| |   ||||||||  | ||||| ||||| |||||||| |||||  |||| |||||||||||||| ||| | |||||||||     | ||| || ||  || ||  |   |     ||||| |   |  | | |   |  ||| | |    | |||   | |    |||   ||     
AGATGAAGGTGAGCGCTTGGAGGGTTTCATTGCTGGCTTAGAACCTATGAATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAGgtaagactaatatcct-ttattgtttataaactagacagatcagttaaccatctctttctctttttttaactttgcataactacccacttaagttgcctct

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 4
AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaagtatgctcttgctgatt--tgaggattatttg-atcaat-cttctgtttgtcataatttctaaggcatccattcttccttctttattctgttaga
|     ||     |  |   | | |   ||||||||  | ||||| ||||| || |||||||||||  |||||||| | |||||||| ||| |||||||||||    |    | || |||||| ||  |||  |  | ||  |||| | | | | ||  |  | || |  |   ||         ||       |     |   
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacct-cttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggctacccagtaccctctaact---

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 4
AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaagtatgctcttgctgatttgaggattatttgatcaatcttctgtttgtcataatttcta-aggcatccattcttccttctttattctgttaga
|  |||||| ||   |||||| |  |  ||||||||  | || ||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||| | |||| |||| |      |    | | | ||   |    ||  |||||  | ||| | ||  |   |||     |    |||||   |  || | 
ATTCCTTGAACAGAGTTATGAAGCCAAGATTGCTGGTTTAGAGCCCATGAACTTTATAACATTTGCAACACCACATCTCGGTTCAAGAGGAAATAAACAGgtagctgaagtttgctatgaacagtagctgtaatgttctttgtgcctgttgtttcacttaactacttcaattatcagacataaaatcttttggcattttg-

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 5
AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagat---taagtatgctct---tgctgatttgaggattatttgatcaatcttctgtttgtcataatttctaaggcatccattcttccttctttattctgttaga
|  |||||| ||   |||||| |  | |||||||||  | || ||||||||||| ||||||||||| |||||||||||||||||||| ||| | |||||||||| |   ||||| |||| |      |   |  |   || | ||     | ||    ||  | | |||| | || | |  | ||||    | ||  || ||    
ATTCCTTGAACAGAGTTATGAAGGCAAAATTGCTGGTTTAGAGCCCATGAACTTCATAACATTTGCAACACCACATCTTGGTTCAAGAGGAAATAAACAGgtagctgcttaagtttgctatgaacagtagctgtaatgttctgtgcctgttatttctctttacttcatttatcagacttaaaatcttttgacatt--tcggt----

upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaa-----------gtatgctct-------tgctgatttgaggattatttg-------atcaatcttctgtttgtcataatttctaaggcatccattcttccttctttattctgttaga
 |      ||    |    |  |    |||||||||  | ||||| |||||||||||||| || || || || |||||||||||||| ||||| | ||||||  ||| |           | ||||          || | || | ||| ||   |        ||  ||  ||| ||| |  |||| | || | ||| | | ||    |||| ||||  | || 
GAAGGAGAAGAGCGCAAGAGGAGGCGAAATTGCTGGGTTAGAACCTATGAACTTTATAACTTTCGCAACGCCTCATCTTGGTTCAAGAGGACATAGACAGgtgaattgatgttttagactgcatgcctaggtcaaatgtttatgtaaggtttgcatatatatatatagataatctctttct-gtaatctgtatgacatgcttactcttgtcttcattccctcag-