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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttttgatggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatatacttagaagtgctcattttttgctgaaaagaaatgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacag

Basic information

species Vitis vinifera
transcript Vv11s0052g01480.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G07320.1 (Glycine max), 5'ss of exon 10
TTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttttgatggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatat-acttagaagtgctcattttttgctgaaa-agaaatgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacag
||||||| || |||||||||||||| | ||| ||||||||||| || ||||| |||||| ||||||| ||||||||||| || ||||| || || || ||||||||    |||||    |  |  |  ||  | || || | |   |||||   | | ||  || |||   |    | |  ||| |   |  |  |||  |||||    || |||   |   ||  |   | | | | ||| | ||| | |||                   
TTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGgtaatt----tgatgc--atgcatgggcttatatttcatcaata--tttaatagtatgct--ttaaggcactgaaatgtgcagccttccatctgaaagccctcatggactgttgatgtatttatttatgctgtttattctgagcaatttaacag------------------

upper sequence: Vv11s0052g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G01190.1 (Glycine max), 5'ss of exon 7
TTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttttgatggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatatacttagaagtgctcattttttgctgaaaagaaatgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacag
||||||| || |||||||||||||| | ||| ||||||||||| || ||||| |||||| ||||||| ||||||||||| || ||||| || || || |||||| |    |||||    |  |  |  ||  | || || | |  ||   |  || |   |   |   ||||        |  | |  |  |  ||   |||||    || |||      ||  |   | | | | ||| | ||| | |||                   
TTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGgtaact----tgatgc--atgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgc------agccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacag------------------

upper sequence: Vv11s0052g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaat--tgttttga-tggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatatacttagaagtgctcattttttgctgaaaagaaatgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacag
| ||||| |||||||||||||| |||| ||| ||| ||||||||||  | || ||||||||||| || ||||||||||| || |||||||| ||||| ||||||    ||||    |  |  |  | |  ||   | |||   ||    |  || | |||    |   |     |      |  ||                                                                                       
TCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagtttcacctattcatgcattatatactattttcctagagtatccaattatctgacatcacattggttgactcctccag---------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881847|gb|DT030902.1|DT030902
EST:     GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAG                         GACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG
genomic: GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttt ... tattgaacagGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG
EST: gi|71883412|gb|DT032467.1|DT032467
EST:     GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAG                         GACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG
genomic: GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttt ... tattgaacagGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG
EST: gi|71882459|gb|DT031514.1|DT031514
EST:     GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAG                         GACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG
genomic: GAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaattgttt ... tattgaacagGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGG