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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATGAGGCCGCTGGGGAGGTTCCTGTTGCATTCATTGTGAGATCGAATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataaatgtgtgataaaaattatgatttgcttgtaattagaatatgagttatttctagacttagaaaataaatgacacatgaaacatgttaaatt...

Basic information

species Vitis vinifera
transcript Vv11s0052g01090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G07170.1 (Glycine max), 5'ss of exon 4
GAAAGATGAGGCCGCTGGGGAGGTTCCTGTTGCATTCATTGTGAGATCGAATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataaatgtgtg------ataaaaattatgat-ttgcttgtaattagaatatgagttatttctagacttagaaaataaatgacacatgaaacatgttaaatt
||| ||||| |  || || |||||||| ||||||||  ||||  |||| |||||||| | |||  |||||||||| || |||||||| ||||||||||||||||  ||   |||  |        |  | |||  || ||  | | |  | | || | | |||| |   |      ||| |  |  |    ||  |||         
GAAGGATGAAGTTGCAGGAGAGGTTCCAGTTGCATTTGTTGTACGATCAAATGGTTCAATGATTTCTGAGGATGAAATAAAGCAATACATCTCAAAGCAGgtaattatttttgttggctttcagcattagttacaatgtttgtggcatcttgtattttaattatattgtgctacgaaaatttcaatatttttgtgacag--------

upper sequence: Vv11s0052g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G07180.1 (Glycine max), 5'ss of exon 4
GAAAGATGAGGCCGCTGGGGAGGTTCCTGTTGCATTCATTGTGAGATCGAATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaa--aaataaatgtgtgataaaaattatgatttgcttgtaattagaatatgagttatttctagacttagaaaataaatgacacatgaaacatgttaaatt
||| ||||| |  || || ||||||||| |||||||  ||||  |||| |||||||| ||| |||| |||||||| |||| || ||| |||||||||||||||    |||    ||  | |   ||     |  ||  |  | | |   |||         | | | ||  ||  | ||  |  |   ||    |  ||   
GAAGGATGAAGTTGCGGGAGAGGTTCCTATTGCATTTCTTGTACGATCAAATGGTTCTAAGGTCACCGAGGATGAAATCATGCGATACATCTCAAAGCAGgtagtttaattttcgttggctttcaacacaaacatgaataaattaaatttattctcacgcaccaaatttttaaggtgaaaaatcccctaa-tgcgagaagg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352773382|gb|FQ472164.1|FQ472164
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352763350|gb|FQ471662.1|FQ471662
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|34544649|gb|CF512881.1|CF512881
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352768425|gb|FQ469601.1|FQ469601
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352763804|gb|FQ473507.1|FQ473507
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352773557|gb|FQ472339.1|FQ472339
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33409507|gb|CF215134.1|CF215134
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110380128|gb|EC945372.1|EC945372
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110383417|gb|EC947790.1|EC947790
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33402238|gb|CF207865.1|CF207865
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352764855|gb|FQ471915.1|FQ471915
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGNNNNNNNNGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352778223|gb|FQ465533.1|FQ465533
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352781213|gb|FQ466526.1|FQ466526
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352769074|gb|FQ471022.1|FQ471022
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|30320706|gb|CD003968.1|CD003968
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352773426|gb|FQ472208.1|FQ472208
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352767918|gb|FQ466127.1|FQ466127
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33403621|gb|CF209248.1|CF209248
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|18459269|gb|BM437547.1|BM437547
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGNNNNNNNCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352773482|gb|FQ472264.1|FQ472264
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352776545|gb|FQ474847.1|FQ474847
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352767962|gb|FQ466171.1|FQ466171
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352768319|gb|FQ469494.1|FQ469494
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110426141|gb|EC992538.1|EC992538
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110390596|gb|EC955515.1|EC955515
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110421851|gb|EC988154.1|EC988154
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352782065|gb|FQ469363.1|FQ469363
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33409263|gb|CF214890.1|CF214890
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352774138|gb|FQ474661.1|FQ474661
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352778153|gb|FQ468815.1|FQ468815
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352765137|gb|FQ465834.1|FQ465834
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110690401|gb|EE067466.1|EE067466
EST:     TGGTTCGAAGATCACTGANGATGAGAATCA-GCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTT
genomic: TGGTTCGAAGATCACTGAGGATGAGA-TCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTT
EST: gi|352769542|gb|FQ468470.1|FQ468470
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352764547|gb|FQ472904.1|FQ472904
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110731580|gb|EE106126.1|EE106126
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33402316|gb|CF207943.1|CF207943
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|352776928|gb|FQ474235.1|FQ474235
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGNNNNNNNCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|110382018|gb|EC938266.1|EC938266
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTTGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|33403698|gb|CF209325.1|CF209325
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
EST: gi|34363297|gb|CF404882.1|CF404882
EST:     ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAG                         GTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT
genomic: ATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataa ... tattaaacagGTCGTGTTCTATAAAAGGATTTATCGAGTTTTCTTCGTAGAGACAATTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGATGAGGCCGCTGGGGAGGTTCCTGTTGCATTCATTGTGAGATCGAATGGTTCGAAGATCACTGAGGATGAGATCAAGCAATATATCTCAAAGCAGgtaaaaataaatgtgtgataaaaattatgatttgcttgtaattagaatatgagttatttctagacttagaaaataaatgacacatgaaacatgttaaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat