Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttggggttagagattgggataactcaattttagcgaattaacttccactga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G00980.1 (Glycine max), 5'ss of exon 4
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttg-gggttagagattgggataactcaattttagcgaattaacttccactga
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GTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGgtagttgctaaatataagaccttcgattgatgttagt-ctcgcaatgtgttatgcgtgtgagttcaatgtgttttacttttgatgttgtag----------
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G07040.2 (Glycine max), 5'ss of exon 4
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttggg----gttagagattgggataactcaattttagcgaattaacttccactga
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GTTTCAATTGCGAGGACTTGCAATTGCATTTACGTCTTGCTGCAGCAGAGACAGCGCGACGTGGAGTTTAGAGAGTCTGCTAATGATCAAAGACAACGgta--gttgccaaataagtataatccttcgatt-aatgttagtcacgtaatgtgttgtgtgtgagttcaatgtgttttacttttgatgttgtag----------
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G18876.2 (Arabidopsis thaliana), 5'ss of exon 2
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttg-gggttagagattgggataactcaattttagcgaattaacttccactga-
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GTTTCGATTGCTAGAACTTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATCTGCTAATGATCAGAGACAACGgtgactattttgttttttttatctgaatg--ttgatttttctatgtgcattgtgaattaatggatgttgttaaactaatttagtagcttcattatgatagtg
upper sequence: Vv11s0052g00890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G57410.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtt---tttggttgttttcgttggtttgcttg--aatgt-ttgctattttttggggtt-------agagattgggataactc----aattttagcgaattaacttccactga-------------------------------------------------------
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GTTTCTATATCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGACAACGTGATATAGAGTTTAGAGAATCTGCTAATGAGCTGAGACAGAGgtgaattttgtttttcttccttctttcaatttgctttgcattgcattgtggttaattgaaattgttctttgaggattagtattggtctggagattgtagcagttttatctactttgattttgcggaagaatgtttccttgtggtttatgtgcatttcccttactgtgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964330|gb|GW838133.1|GW838133EST: AGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCG ACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTC
genomic: AGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttt ... tatgatgtagACTTCTATCTGACATATCGAGATTGGAGGCCAAAGTTGAGAGGCTTGAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCGATTGCGCGGACCTGTAATTGCATTTACTCTCTGCTGCAGCAGAGGCAGCGTGATGTTGAATTTAGGGAGTCTGCTAATGAGCAGAGACAGCGgtaatgtttttggttgttttcgttggtttgcttgaatgtttgctattttttggggttagagattgggataactcaattttagcgaattaacttccactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggataa