1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAGCATGAGCGTCAGAAAGAGAGTGAAGAGAGGAACCAGGAATTACAGCACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAGgtaaagctcataaacctgaaatcttctgaactacatgttacttaattttagatggggaaaggatcaacctatttcacaaattgcatggttattcttaaat...
species | Vitis vinifera |
transcript | Vv11s0016g05730.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAG GTGAATAACTATGCACTCTCAATGCACCTGAGGCAGGCTCAGCAAAGTAGCEST: gi|110688137|gb|EE066345.1|EE066345
genomic: ACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAGgtaaagctca ... ggtgtaacagGTGAATAACTATGCACTCTCAATGCACCTGAGGCAGGCTCAGCAAAGTAGC
EST: ACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAG GTGAATAACTATGCACTCTCAATGCACCTGAGGCAGGCTCAGCAAAGTAGC
genomic: ACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAGgtaaagctca ... ggtgtaacagGTGAATAACTATGCACTCTCAATGCACCTGAGGCAGGCTCAGCAAAGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCATGAGCGTCAGAAAGAGAGTGAAGAGAGGAACCAGGAATTACAGCACCTGAAGCAGGTGGTCACCCAGTACCAGGAGCAGTTGAGAACGCTAGAGgtaaagctcataaacctgaaatcttctgaactacatgttacttaattttagatggggaaaggatcaacctatttcacaaattgcatggttattcttaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaag