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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctttcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag

Basic information

species Vitis vinifera
transcript Vv11s0016g04730.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G08220.2 (Glycine max), 5'ss of exon 3
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctt-tcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttt-tgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||    |||| |  |  |||  ||      |  |  || |   |  | |  | ||||  | ||    |||   ||   |   | ||||                                                    
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatag----------------------------------------------------

upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 3
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctttcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||   |||| ||||  ||  | |||       || |  ||| ||||        ||| || || ||||     |||    | ||| || |  |||| ||  |||  |    |||                        
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgt--gtatactttgatgttggtcttgacgcataatttcaactgata-------gtataacttgttga-----gatcaaatgata-atttggtgaactt--tttggtgcttcatag----------------------

upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ14522 (Selaginella moellendorffii), 5'ss of exon 2
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctttcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag
  ||||||||||| ||||| || |||||||| || || |||||||| || ||||| |||||||| ||||| ||||| || || |||| ||| | |||| || |    | |  |  |     | ||    ||   |||    |    ||||      ||| |||||  |                                                       
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactcttcctagcacattttttccttcttaaacaccgaat---gaa--acagtggttttct----ttgtttttcgcag------------------------------------------------------

upper sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ26224 (Selaginella moellendorffii), 5'ss of exon 2
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctttcttggg-gttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag
  ||||||||||| ||||| || |||||||| || || |||||||| || ||||| |||||||| ||||| ||||| || || |||| ||| | |||| || |    || |  | |||||  | ||    ||   |||    |    ||||      ||| |||||  |                                                       
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactcttcctagcacatttttttcttctaa-aacaccgaat---gaa--acagtggttttct----ttgtttttcgcag------------------------------------------------------