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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaagtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatggtataaccagttgattctaatattataaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g03750.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G08550.1 (Glycine max), 5'ss of exon 5
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaa-gtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatggtataaccagttgattctaatattataaacag
| || |||||||||||| | || ||||| || || ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||   | | |||       |  | | |||    |  ||| | ||   | | | |  ||    | || ||   ||||  ||| ||    || |  ||   ||   ||   | |||  | || ||| |   |  ||||||
CGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTCGTCAAAGGTCCATGGTCTAAAGAGgtaaactctactttccatttcttgcccatgttgatcttatctctacatgttagaatttattttgatgtaatattagaatgta--taaattttctgtttacatatctaatgtgaagtcacctatcgaatctgaa--tgcaaacag

upper sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G08660.1 (Glycine max), 5'ss of exon 5
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaagtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatg--gtataaccagttgattctaatattataaacag
|||| |||||||||||| | || ||||| || || ||||| ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |  ||   | | |||       |  |   |||    |  ||| | |   | |||||  |  | |  |||||| | | |  ||   |  |  ||||||   ||  ||||     | | |  | || ||| |   |  ||||||
CTGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGgtaatctctactttccatttcttgcccgtgctgatcttatctctaca-tgttagtatttattttg-atgtaatat-tagaatgtataatttttctgtttacacatctaatgtgaagtcatctatcgaatctgaa--tgcaaacag

upper sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G26240.1 (Glycine max), 5'ss of exon 5
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaagtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatac-aatggtataaccagttgattctaatattataaacag
||||||||||||||||| | || ||||| || ||  | || |||||||||||||| ||||||||||||||  | |||||||||||||||||||||||    || | | | |||     | |||| |    |          | |   ||   | |||    || | ||   || |  ||   || |     ||| || |  | ||  | ||||                          
CTGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGgtattctcttctttccat-----ttctttttgtgct----------aattttatctctacatattgaagttattctttttccct---tttccttcctttcttaaccctaaacggataa--------------------------

upper sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G32730.1 (Arabidopsis thaliana), 5'ss of exon 5
CTGAATGTTTCAAGGATCGGACCGATGTTCAGTGTTTGCACAGGTGGCAGAAAGTCTTAAATCCTGAACTCATCAAAGGTCCATGGTCTAAAGAGgtgaattcatttgtacatcagactgctttatagattccttgcctaaagtaccattatttcatgggcaattaatatcttgtaactaagttgctggtgtttattgatacaatggtataaccagttgattctaatattataaacag
|||||||||| ||||||||||| |||||||||||| | || || ||||| || ||||| || || || ||  | ||||| || ||||| |||||||||| ||  |   |   |     |||||||     |    | ||||   ||| |     |||  | |||   |  | ||  | ||  || |     |||   |                                        
CTGAATGTTTTAAGGATCGGACTGATGTTCAGTGTCTTCATAGATGGCAAAAGGTCTTGAACCCAGAGCTTGTGAAAGGACCGTGGTCAAAAGAGgtgattttgtgaattgctttatatgctttactcggtttgagtctaatacaccttag---catttgtaatgtgttccatgacattacttttccatgttttgaag----------------------------------------