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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCGGGTCAAAGAGTACCTTCCCATTGTTGGACTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaactttctaatctgaggaaataagggacttggtgctttgtattcagtagcataaaaaatatgctatatagattttgtgttgaattgtaaggttaaagcgttgcattattcttctggacttcctgatatgattgtttggagtttattaaagtattgtgctttatctggcaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g03720.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 4
GTCCCGGGTCAAAGAGTACCTTCCCATTGTTGGACTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaactttctaatctgaggaa-ata-agggacttggtgctttgtattcagtagcataaaaaatatgctatatagattttgtgttgaattgtaaggttaaagcgttgcattattcttctggactt--cctgatatgattgtttggagtttattaaagt-attgtgctttatctggcaacag
||| || || || |||||  | || ||   ||||||||| || ||||||||  |||| ||||| || |||||||||||||||||||  |    || ||  ||| | ||| ||| | || | |   | ||  |  || ||  | |   |   ||  ||   |    |    ||   |    | | |||    ||    |  | | ||    ||  | |  | |  |  |  | | || |  ||| | ||| | || | | | | |||||
GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAGgtgcg----ttcctgctctcaagaatatatatggtcatatggtttcctcatctgttacctttgaccaattgtaacaaacagtaaaattatctcactaagataacttcttcagatcctttgctacttttggcttattcttgtattaggtaattcacaaaactgattatactatttattggaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856755|gb|DT005810.1|DT005810
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161707491|gb|FC057730.1|FC057730
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|110707578|gb|EE084139.1|EE084139
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161709257|gb|FC060537.1|FC060537
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161719485|gb|FC066421.1|FC066421
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161719323|gb|FC068275.1|FC068275
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|18458020|gb|BM436298.1|BM436298
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|351043366|gb|FQ451418.1|FQ451418
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|351041433|gb|FQ447560.1|FQ447560
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161705960|gb|FC056683.1|FC056683
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|351032771|gb|FQ462485.1|FQ462485
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161716797|gb|FC067211.1|FC067211
EST:     GCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: GCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|30126137|gb|CB911476.1|CB911476
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|71857156|gb|DT006211.1|DT006211
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|351036480|gb|FQ457193.1|FQ457193
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|71859825|gb|DT008880.1|DT008880
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|71854888|gb|DT003943.1|DT003943
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|349819864|gb|FQ404532.1|FQ404532
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|71879610|gb|DT028665.1|DT028665
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161709194|gb|FC060110.1|FC060110
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|352778302|gb|FQ465612.1|FQ465612
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCCAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|161708734|gb|FC057910.1|FC057910
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|352776536|gb|FQ474838.1|FQ474838
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|37183728|gb|CF603082.1|CF603082
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|349816215|gb|FQ403711.1|FQ403711
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|71861868|gb|DT010923.1|DT010923
EST:     CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCCATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: CTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
EST: gi|27586682|gb|CB009377.1|CB009377
EST:     GCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG                         CCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC
genomic: GCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAGgtatgaaact ... ctggcaacagCCCGGCTATCCAAGAAAATAGAGTAGCTACTGTCCAGGGTTTGTCTGGTAC