Sequence
atgc intronic sequence ATGC exonic sequenceGTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaatctatgcaattaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g17680.1 (Oryza sativa), 5'ss of exon 4
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactc--ttaatctatgca-attaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca-
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GTGAGGAAGGAGAAGCTAGGTGATAGAATAACTGCCCTTCACCAGCTTGTCTCCCCATTTGGGAAGgtacatatatatcactacatgcatgttattagtctttagctt---ttagatttcaacaatgggaagagaataat-tgtcactaggctagtagaatataacaact
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g13000.1 (Oryza sativa), 5'ss of exon 4
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaatctatgcaattaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca---
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GTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGgtactacagc-aacttaattaaccac-aaatcactagttaatgtaatactacctctgtcccacaatataat-tatattcaaatttgtcttaaaataattgtca
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G09180.3 (Glycine max), 5'ss of exon 3
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaa--aactcttaatctatgcaattaagaaagtacaaattaagctagatctagcacataaa------aatggaataatatgtgtgtagttctttatgaggaaaccca
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GTTAGGAAGGAAAAGCTAGGTGAGAGAATTACGGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGgtaataagatcctagcttattcaattaaaattaaaaaatattaaccatatacactttaacaattctttaattaattgataaattattaggcatttgtgac--------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G04110.1 (Glycine max), 5'ss of exon 4
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaatctatgcaattaaga-aagtacaaat-taagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca
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GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtataaacct-aatttattcaatggaattgaatatttacataaacttaattta-tatccaaaattggaataaaaaactaaagtatatatatatatatatata
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G35610.1 (Glycine max), 5'ss of exon 4
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaat---ctatgcaattaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca--
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GTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGgtttaaacctaatttaattattcaattgaacatttaca---taaacttaattta-tatccaaaattggaatcaaaaac-tgaagtatcaaatatatatcttcataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871899|gb|DT020954.1|DT020954EST: TAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAG ACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTC
genomic: TAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactct ... tcttttgcagACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTATCCCCATTTGGGAAGgtaaaactcttaatctatgcaattaagaaagtacaaattaagctagatctagcacataaaaatggaataatatgtgtgtagttctttatgaggaaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaac