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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCTCTTGGTCGTGTGATTGGTGGCACTGTTTACCCAGGATTGACCTTAACAGCAGGCTCCATATGGTGgtgggtatttgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgcttctagattgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03320.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 4
GTATCCTCTTGGTCGTGTGATTGGTGGCACTGTTTACCCAGGATTGACCTTAACAGCAGGCTCCATATGGTGgtgggtatttgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgctt--ctagattgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcag
|||||||||||| ||||| |||||||||||||| || || || |||||  | || || ||  | ||||||||||  ||   ||       ||||   | || |    |   | || ||     ||| ||||  | | || || || |  ||  ||||  |   ||||   |                                                                                                
GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactg---ccaatgcatactattag----aaatgcttcat--tggtagatttga-actactgttagcatgactgaattg--tttggttggcatag----------------------------------------------------------------------------------------------

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 4
GTATCCTCTTGGTCGTGTGATTGGTGGCACTGTTTACCCAGGATTGACCTTAACAGCAGGCTCCATATGGTGgtgggtatttgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgcttctag-attgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcag
|||||| ||||||||||| |||||||| ||||| || || || |||||||| ||||||||| || ||||| ||| || |||||| |       |  ||| ||||   |         |||  | | |||| |  |   ||| |  |  ||  ||| | ||    |||    |||   |||  |  |    | ||   ||     | |||  | || |    |||  |      | |                              
GTATCCCCTTGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcatttgaaacacagtaatgttggttgtcata---------tgctgtgatttttctcttcattttatagtaataatattaaatatccatgcaagcaattgttttgaagtttatctaaggtgtt-----tggtatttttggacctttcccttctggtttcag-----------------------------

upper sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATCCTCTTGGTCGTGTGATTGGTGGCACTGTTTACCCAGGATTGACCTTAACAGCAGGCTCCATATGGTGgtgggtatt-tgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgcttctagattgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcag
|||||||||||| ||||||||||| || ||||||||||| || || || || || || ||  |||| |||||||| || |  |   | || |   |    ||  |||    | |   |||   | |||||||   |||  || |   | |  ||     ||||                                                                                                       
GTATCCTCTTGGCCGTGTGATTGGAGGAACTGTTTACCCTGGGTTAACTTTGACTGCTGGAACCATCTGGTGgtgagtgtagtttcactgttatcagcaattatttgatacacacgtatgg-gtcagttttgagttttaattatttatatctatgtgccacag-------------------------------------------------------------------------------------------------------