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ATCGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctgcccaactttttcttttctaataagttattgcaaatataacatatttaatgaaactatgtcttatatgcacatgcatccgttcccaaatgt...
species | Vitis vinifera |
transcript | Vv11s0016g03200.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|71862772|gb|DT011827.1|DT011827
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|71861743|gb|DT010798.1|DT010798
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|71862499|gb|DT011554.1|DT011554
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|71881554|gb|DT030609.1|DT030609
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: TGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCGCGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71864491|gb|DT013546.1|DT013546
genomic: TGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|71887181|gb|DT036236.1|DT036236
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: TGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCGCGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71864483|gb|DT013538.1|DT013538
genomic: TGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAEST: gi|77589174|gb|DV223847.1|DV223847
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAA
EST: TGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCGCGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71863373|gb|DT012428.1|DT012428
genomic: TGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCTCTTGACCTTGAEST: gi|294965788|gb|GW839243.1|GW839243
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|110690968|gb|EE068534.1|EE068534
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71884795|gb|DT033850.1|DT033850
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: TGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCGCGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|110404543|gb|EC969762.1|EC969762
genomic: TGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71863525|gb|DT012580.1|DT012580
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGAEST: gi|71884047|gb|DT033102.1|DT033102
genomic: CGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
EST: TGGAGAAATTCCATCAAGAGGCGCT TGAGGTGGCTAAAGCAGTTGCGCGGATCATAGCTCTTGCCCTTGACCTTGA
genomic: TGGAGAAATTCCATCAAGAGGCGCTgtaagttctg ... ttgcattcagTGAGGTGGCTAAAGCAGTTGCACGGATCATAGCTCTTGCCCTTGACCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCTTGCCAGAATGGAGGCAGACTATGGAGAAATTCCATCAAGAGGCGCTgtaagttctgcccaactttttcttttctaataagttattgcaaatataacatatttaatgaaactatgtcttatatgcacatgcatccgttcccaaatgt
- - - - - - - TGGAGG
- - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa