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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTAAGgcatgcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatttgatattttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacag

Basic information

species Vitis vinifera
transcript Vv11s0016g03130.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 4
CACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTAAGgcatgcatttatttttctaccatttcattt--tgctttacagaaagaa----ctagactccctcttatacacatttttatgtgatggaggcatttatttgatatttt----ttcatc-----atgtcttc----cttcattgact-----tttatggtatgtctaatggtcacag
 |||||||| |||||||| ||| ||||||| |||||||| || ||||||||||| || || |||||||| |||||| | || || | | |||| ||| ||| ||  ||   ||        |||| || |   | ||| ||   | ||    ||     |  ||   ||     |||    || |||||  | || |||  | ||||    || |||      |||  |     | ||||| ||      |||   |  ||| |  ||    |||
AACATCTCTATATGGTGGCCCTATAGAATTTCTTTTTGTGGTAGAAAGTACAGAGGATCCCGCTTACCATGCTGTATCACGATTAATAGCAGAATTTGAGgtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcag

upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 3
CACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTAAGgcatgcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatt-tgatattttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacag
 |||||||| |||||||| ||| ||||||| |||||||| || ||||||||||| || || |||| ||| |||||| | || || | | |||| ||| ||| ||  ||   |||       |||   | |    ||                    |||| | ||||||  | | |     |   ||||  | | |  ||||  || | |    ||                                    
AACATCTCTATATGGTGGCCCTATAGAATTTCTTTTTGTGGTAGAAAGTACAGAGGATCCTGCTTTCCATGCTGTATCACGATTAATAGCAGAATTTGAGgtataaataagtttagaagttattctctctcatgtttt-------------tcttttcttttccacattcatgtctat---aattatttgctattaagttttgccaacgtaaactc------------------------------------

upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 4
CACATCTCTGTATGGTGGTCCTTTAGAATTCCTTTTTGTTGTGGAAAGTACAGAAGACCCAGCTTACCACGCTGTAACTCGGTTGAAATCAGATTTTAAGgcat-gcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatttgatattttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacag
 || ||||| |||||||| || || ||||||||||||||||| |||||||| |||||||| || || ||||||||  | ||  |   |||    | | ||| |  |||   || |||| || || ||||| || |         |   ||       ||| ||  |      |||       | |   || |||  | ||     |||   |    || ||||     | ||  | | |  ||||  |||||
TACTTCTCTCTATGGTGGGCCATTGGAATTCCTTTTTGTTGTAGAAAGTACGGAAGACCCTGCATATCACGCTGTTTCCCGTCTATTATCTATGTATCAGgtacagcagacatgtttcaac-atatcattgtgttc--------gtgttatttgttatct-atcgatggaagtatagtccatatggccttcttttgtcttgaagtatctactgactctacatttttcctaatc-tgtcttcaatgtacacag