Sequence
atgc intronic sequence ATGC exonic sequenceATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatgatttctaacacaaccttctgcaaattatatccaagagaactacagcttccataattcaagaacagctcttcatctgatctctatgtggaatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g53800.1 (Oryza sativa), 5'ss of exon 3
ATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatgatttctaacacaaccttctgcaaattatatccaagagaact-----acagcttccataattcaagaacagctcttcatctgatctctatgtggaatgtag-----------------------------------------------
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ATATGTTATCCTTGGTAACCATCGTGATGCCTGGACGTTTGGAGCATCAGATCCCAATAGCGGAACGGCAGCTATGATTGAGgtaatttttggggcacaaagttctttctccgaagttcagtaggctgtactttatcgtaactttgctgagccaa-aacaccgttttataatactgcgactgatcactcagaacatggccatgtctgcatcttggcgtgttgtttacttgtcgtttag
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g53810.1 (Oryza sativa), 5'ss of exon 3
ATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatgatttctaacacaaccttctgcaaattatatccaagagaactacagcttccataattcaagaaca---gctcttcatctgatctctatgtggaatgtag
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ATATGTGATCATAGGGAACCATCGTGATGCCTGGACATTCGGAGCAGTTGATCCCAACAGTGGAACAGCAGCTATGCTCGAGgtaatcaattcagtttagagga------gcaaattatacagatatgtcatctttcatcagacatttggagacatgaatatttcatcctttccctttctagttagcc-
upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G01000.2 (Glycine max), 5'ss of exon 3
ATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatg-atttcta---acacaaccttctgcaaatt-atatccaag-agaactacagcttccataattcaagaa--cagctcttcatctgatctctatgtggaatgtag
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ATTTGTCATACTAGGTAACCATAGGGATGCATGGACATTTGGAGCGGTTGATCCCAATAGTGGCACTGCAGCACTGCTTGAGgtaacaatggatttgtttgtaggcattgttttgcttatttatatcaaaccaatggcacaagtgacatgtctcatgaaattag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710708|gb|FC060286.1|FC060286EST: GGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAG GTTGCTCAAAGGTTAAGATAGCTGCAGAAGAGAGGGTGGAGACCTAGACGG
genomic: GGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatga ... tggaatgtagGTTGCTCAAAGGTTAAGAAAGCTGCAGAAGAGAGGGTGGAGACCTAGACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGTTCTTCTTGGTAACCACCGGGATGCCTGGACATTTGGAGCTGTTGATCCCAATAGCGGCACTGCAACTCTGCTTGAGgtaattatgatttctaacacaaccttctgcaaattatatccaagagaactacagcttccataattcaagaacagctcttcatctgatctctatgtggaatgtag
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - GCTGTT