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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattcttctttgactttacatctgccagttctgtgattcttagatgccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g02890.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g05870.1 (Oryza sativa), 5'ss of exon 3
GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattc-ttctttgactttacatctgccagttctgtgattcttagat---gccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag-----------------------------------------
 ||| || ||| || ||||| || ||||| |||||||||||  | |||||||| ||| ||||||||||||| || ||||| |||||||| |||||| ||  |    |   ||  |   |  |    |  ||   |     ||  ||      ||  |       | ||  ||    || ||  |  ||  |||||||  || |      |                                           
TCTCGTGGGATTGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCCTCACTTGTGGATATTAGTCGAGCTGTTGATTTCATACATAgtaagtgagcaatagattagcccaatgtgaaacttttaactagccatttaattagttgatcatcctagaattagtggatgacttgttgaccattcaggttttctattgtcaacctcttttttaaatttaaatatgacatctctgaatatttcttattag

upper sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g05870.2 (Oryza sativa), 5'ss of exon 5
------GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattc-ttctttgactttacatctgccagttctgtgattcttagatg---ccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag-----------------------------------------
       ||| || ||| || ||||| || ||||| |||||||||||  | |||||||| ||| ||||||||||||| || ||||| |||||||| |||||| ||  |    |   ||  |   |  |    |  ||   |     ||  ||      ||  |       | ||  ||    || ||  |  ||  |||||||  || |      |                                           
TTTCAGTCTCGTGGGATTGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCCTCACTTGTGGATATTAGTCGAGCTGTTGATTTCATACATAgtaagtgagcaatagattagcccaatgtgaaacttttaactagccatttaattagttgatcatcctagaattagtggatgacttgttgaccattcaggttttctattgtcaacctcttttttaaatttaaatatgacatctctgaatatttcttattag

upper sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G051288_T01 (Zea mays), 5'ss of exon 3
GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattcttctttgac-tttacatctgccagttctgtgattcttagatgccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag
||| ||||||| || |||||||||||||| |||||||||||||| ||||| |||||||| | |||||||   |  ||  |||||||||| ||| || ||   ||   ||||    ||||  | |    |       |  |          |      |  |   ||   |     |      |  |  ||||||               
GCTAATGAGATTGAGCACCTGGTAATTCCAACAAGAGATTACCTCTTTGCACCTTCATTCGAGGATATTTCTCAAGCCATAGATTTCATCCATCgtaagttcttgccctttcttgtttatttttaagggaataagtacacgatagcaaattcacaccttttcctgaaacataaccccagcgctgatcagttttc---------------

upper sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G863550_T01 (Zea mays), 5'ss of exon 3
GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattcttctttgactttacatct-gccagttctgtgattcttagatgccatggtgtgtagttgag-atgaaagtttcttttctttttgggttttcccttctggggaacag
 | | || ||| || ||||| || ||||| |||||||||||  | |||||||||||| ||||||||||||  |  |||   ||||||||||||||| ||  |  |       || |||  |||  | ||||  ||| |  |    ||| | |||    | ||| | ||| | | |  ||   ||  ||   |      |           
TCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATAgtaagtgagccgc-----acattatgtctcactagttgagtgctcatgcattgctacggtaaacacttgtgtatgcatgatgattcggttaatgctatacaaaat-----------

upper sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G36020.1 (Glycine max), 5'ss of exon 3
GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattcttctttgactttacatctgccagttctgtgattcttagatgccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag-------------------------------
||||| | ||| || ||  |||| |||||||| |||||||| || ||||| || |||||||||||||| | ||| |||||  | ||||||||| ||| |   ||  | ||  | || |  || |  |  | || | |   || ||||     | ||| |||            | | || ||||| |||| |   |  ||    | ||                               
GCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttttcttttcaatttaatttcgggaaagtgtggggtg--taaatgcatgtctatgtggtt-----------ctttgttattttttggttgttggtggtgaaatatagtcgtatgtgtatttcctttgtattatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156735982|gb|EV240103.1|EV240103
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351032518|gb|FQ458883.1|FQ458883
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351034943|gb|FQ458300.1|FQ458300
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|349809160|gb|FQ398901.1|FQ398901
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351039844|gb|FQ464882.1|FQ464882
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|110379170|gb|EC944349.1|EC944349
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351044066|gb|FQ452739.1|FQ452739
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|110388085|gb|EC952801.1|EC952801
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351037982|gb|FQ465220.1|FQ465220
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351052950|gb|FQ453937.1|FQ453937
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|349819705|gb|FQ402642.1|FQ402642
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351037230|gb|FQ457063.1|FQ457063
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAAGCTGGACGA
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAA-GCTGGACGA
EST: gi|351038655|gb|FQ464521.1|FQ464521
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351056738|gb|FQ443365.1|FQ443365
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|71856681|gb|DT005736.1|DT005736
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351041750|gb|FQ455960.1|FQ455960
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351041720|gb|FQ455930.1|FQ455930
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|30304523|gb|CB981317.1|CB981317
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351038816|gb|FQ464682.1|FQ464682
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|110729962|gb|EE106494.1|EE106494
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
EST: gi|351037592|gb|FQ462575.1|FQ462575
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCGTCTTCCGGTAGAACTACTTATGTTCATTGTAAA
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAA
EST: gi|110689256|gb|EE065319.1|EE065319
EST:     TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA                         AGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG
genomic: TTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaatt ... tggggaacagAGAATGCATCTTCCGGTAGAACTACTTATGTTCATTGTAAAGCTGGACGAG