Sequence
atgc intronic sequence ATGC exonic sequenceATTGTTGTTCACAAGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAGgtaagtctttgtttgttatattcatggaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 4
ATTGTTGTTCACAAGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAGgtaagtctttgtt------tgttatattcatggaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttttttccag------
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ATAATTGCTAATAAAGATAGTCCAAGAGGGGTACATTTTCGACGTGCCGGACCTCGTCAAAGGgtatgttatgtttctataataccatgtgtgtatgggtttatctcttaaggaaaattcttgtgtttatgaccgtatgatactggatatatacatatattcag
upper sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G03570.1 (Glycine max), 5'ss of exon 4
ATTGTTGTTCACAAGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAGgtaagtctttgt----ttgttatattcatggaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttttttccag------
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ATAATTGCTAATAAAGATAGTCCAAGAGGGGTACATTTTCGGCGTGCAGGACCTCGTCAAAGGgtatgtttctataatactaccatatgtatgg--ttttatctcttaaggaaaattcttgtgtttatgaccgtatgatactggatatatatatgtattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110416399|gb|EC982380.1|EC982380EST: AGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAG GTGTATTTTGAGTCTGATGAAGTTCATGCATGTATTGTGACATGTGGTGGT
genomic: AGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAGgtaagtcttt ... ttttttccagGTGTATTTTGAGTCTGATGAAGTTCATGCATGTATTGTGACATGTGGTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTTGTTCACAAGAGTAGTCCAAGAGGGACACATTTTCGACGTGCTGGACCCCGTCAAAAGgtaagtctttgtttgttatattcatggaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttttttccag
- - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - GCTGGA