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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTACCGGCGATGATTCTGATATGGATGGTGATGGCAGTGACAGTGATGAAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtacctttttgcttttctaattttatctgtatagttgctagcataatcattattgtgatacacctttatcagttttatcttcttctctacctaatgtgtttgctattgttgtatgtgcctacag

Basic information

species Vitis vinifera
transcript Vv11s0016g02270.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027106|gb|FQ439967.1|FQ439967
EST:     AAGATAGTGAAAATGAGGAGGATGGTGGATCTGGGACACCAATTTTGCAG                         ATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGGGCCATGACG
genomic: AAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtaccttttt ... gtgcctacagATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
EST: gi|351017861|gb|FQ436214.1|FQ436214
EST:     AAGATAGTGAAAATGAGGAGGATGGTGGATCTGGGACACCAATTTTGCAG                         ATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
genomic: AAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtaccttttt ... gtgcctacagATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
EST: gi|351012692|gb|FQ430255.1|FQ430255
EST:     AAGATAGTGAAAATGAGGAGGATGGTGGATCTGGGACACCAATTTTGCAG                         ATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
genomic: AAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtaccttttt ... gtgcctacagATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
EST: gi|349828396|gb|FQ417138.1|FQ417138
EST:     AAGATAGTGAAAATGAGGAGGATGGTGGATCTGGGACACCAATTTTGCAG                         ATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG
genomic: AAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtaccttttt ... gtgcctacagATGCGCAAAGTGGCCCATGAGGGATGTGTTAATCGCATTCGAGCCATGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTACCGGCGATGATTCTGATATGGATGGTGATGGCAGTGACAGTGATGAAGATAGTGAAAATGAGGAGGATGGAGGATCTGGGACACCAATTTTGCAGgtacctttttgcttttctaattttatctgtatagttgctagcataatcattattgtgatacacctttatcagttttatcttcttctctacctaatgtgtttgctattgttgtatgtgcctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT