Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATGGACAGTACCAGATTGATTCTCAAGCCACTCCTACCATGCTAAATTGCCTCATGTACAAACTGTCATATTTCAGgtctgcttttgctttggacttggttcttcatatgtaaaggttatgcttgggttggtgtttgatacatgattatttgtgtctgttttcttttag

Basic information

species Vitis vinifera
transcript Vv11s0016g01590.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G060611_T03 (Zea mays), 5'ss of exon 20
AGAGATGGACAGTACCAGATTGATTCTCAAGCCACTCCTACCATGCTAAATTGCCTCATGTACAAACTGTCATATTTCAGgtctgct---tttgctttggacttg-gttcttcatatgtaaaggttatgcttgggttggtgtttgatacatgattatttgtgtctgttttcttttag
|| ||||| || || |   ||||| ||||||||||||| || ||||| ||||||||||||||||| || |  || | |||||||| |    |   | ||||     | | ||  |  | |   ||   |          ||     |  |   ||||||   | ||| | || |   
AGGGATGGTCAATATCGCGTTGATGCTCAAGCCACTCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGTTACTACAGgtctggtaaactgaatctggaagaatgattttagttgggatgcgtccagtcaccacatatgcccttttgacatttatttcc-tttgtgtcctctag-

upper sequence: Vv11s0016g01590.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G060611_T02 (Zea mays), 5'ss of exon 20
----------------AGAGATGGACAGTACCAGATTGATTCTCAAGCCACTCCTACCATGCTAAATTGCCTCATGTACAAACTGTCATATTTCAGgtctgct---tttgctttggacttg-gttcttcatatgtaaaggttatgcttgggttggtgtttgatacatgattatttgtgtctgttttcttttag
                || ||||| || || |   ||||| ||||||||||||| || ||||| ||||||||||||||||| || |  || | |||||||| |    |   | ||||     | | ||  |  | |   ||   |          ||     |  |   ||||||   | ||| | || |   
GCAATGTTATCTGCAGAGGGATGGTCAATATCGCGTTGATGCTCAAGCCACTCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGTTACTACAGgtctggtaaactgaatctggaagaatgattttagttgggatgcgtccagtcaccacatatgcccttttgacatttatttcc-tttgtgtcctctag-