Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcactaatggccttgcaccgtccacatcacttttaacatatgggcatctgtattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G05900.1 (Glycine max), 5'ss of exon 3
GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcactaatggccttgcaccgtccacatcacttttaacatatgggcatctgtattt------
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GTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGgtaa---tttgggtagcttatacacatgtaaaaacatatac-aatttactaattggctgctgcatgttacttggggc--aatgcataggccgttcaattcctatat
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G16800.1 (Glycine max), 5'ss of exon 4
GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcactaatggccttgcaccgtccacatcactt---ttaacatatgggcatctgtattt------
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GTGGGCAGAGAACTACGACAAAGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCACCAAGATCTGAAGATGAGgtaa---tttgggtagcttatacacatgtaaaaacatatac-aatttactaattggct-gc----tgcatattactcggggcaatgcttaggccgttcaattcatacaa
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G18980.1 (Glycine max), 5'ss of exon 2
GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcac-taatggccttgcaccgtccacatcacttttaacatatgggcatctgtattt-
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GTGGGCAGAGAACTATGACAAGGTGATGGAACTTTACAATGTTCAAAGGCTTGATCGCCAAGCTTTCCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGgtaacttctgaatttatgtagcttctagacat-tgttatgtaaaattttgtaatcgtct-gcatcatgttacttgacccaaatgtttattttgggcaatttt
upper sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G07930.1 (Glycine max), 5'ss of exon 2
GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtccta-ctcaaattgtatacaagaaatatgctacttgaagtcactaatggcctt--gcaccgtccacatcacttttaacatatgggcatctgtattt
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GTGGGCAGAGAACTATGACAAGGTGATGGAACTTTACAATGTGCAAAGGCTTAATCGTCAAGCTTTCCCTCTTCCAACTCCGCCTAGATCTGAAGACGAGgtaacttctgaatttacgctgtgtgaactgtttgtaatttggaatgtagatacagacgtgtggtggtgcaaataccaacgctgactttattctagtccta---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424952|gb|EC991327.1|EC991327EST: TTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCCGAAGATGAG AGCTCAAAAATGGAATCAGCAGAAGACAGCCCTGTTACGCCTCCATTGACC
genomic: TTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcct ... cctctaacagAGCTCAAAAATGGAATCAGCAGAAGACAGCCCTGTTACGCCTCCATTGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGCAGAGAATTATGATAGGGTCATGGAACTCTACAATGTTCAAAGGTTTAACCGCCAAGCCTTCCCTCTTCCAACACCTCCAAGATCTGAAGATGAGgtaaggtcctactcaaattgtatacaagaaatatgctacttgaagtcactaatggccttgcaccgtccacatcacttttaacatatgggcatctgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa