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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACTTGTACTTAAATGGAAAGGAAAACAAAGTGGTCCAACGGCAAACCGTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttttaatatatcttatgcaatttaatgctaacactttgtctagaaagtgacattgcaatttctatggcttttatgtacag

Basic information

species Vitis vinifera
transcript Vv11s0016g00240.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045083|gb|FQ449337.1|FQ449337
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351039630|gb|FQ461497.1|FQ461497
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351044880|gb|FQ449134.1|FQ449134
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351031831|gb|FQ460088.1|FQ460088
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|349808887|gb|FQ406737.1|FQ406737
EST:     GTGATTTAATCTTCTATCACAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351012093|gb|FQ429899.1|FQ429899
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|56409693|gb|CX017945.1|CX017945
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351013159|gb|FQ424864.1|FQ424864
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|352790261|gb|FQ481460.1|FQ481460
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT
EST: gi|351019327|gb|FQ429487.1|FQ429487
EST:     GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGAT                         GTTGAGTGGCTTCCTTATATGAACATTGACAGTAGAATTATACCAGAAGAT
genomic: GTGATTTAATCTTCTATCGCAAGGCATTGGACTCCCTCAAGTCAAGTGATgtaagttttt ... ttatgtacagGTTGAGTGGCTTCCTTATATAAACATTGACAGTAGAATTATACCAGAAGAT