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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTCCAAATTGAGTCCTCCCAAGACTATTGATCAGTCCGCAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGgtaagaatccaataataatgtttgaaaattcaactagaacccctctgatttgtagtcgtcacagtgtggattgggattaatcgaatatgtgtaactgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g01200.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G00820.1 (Glycine max), 5'ss of exon 4
GGCTTCCAAATTGAGTCCTCCCAAGACTATTGATCAGTCC---GCAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGgtaagaatccaataataatgtttgaaaattcaactagaacccctctgatttgtagtcgtcacagtgtggattgggattaatcgaatatgtgtaactgcag
   |   ||| |||  ||| ||||  |||| ||||| |||   ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||| | ||   ||||| |  | | | |  |   |   ||||  |    |  ||  |  ||| | ||     |  |||| |||  ||   || |       
---TCAGAAAGTGAACCCTTCCAATCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatt--ataattaaatataatatgttttcatcaaccaattaattaagttattctcaaactgaattatctgatttatc--attgttgcag------

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G11680.2 (Glycine max), 5'ss of exon 4
GGCTTCCAAATTGAGTCCTCCCAAGACTATTGATCAGTCC---GCAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGgtaagaatccaataataatgtttgaaaattcaactagaacccctctgatttgtagtcgtcacagtgtggattgggattaatcgaatatgtgtaactgcag
   |   ||| |||  ||| ||||  |||| ||||| |||   ||||| ||||||||||| ||||| || || || ||||||||||||||||| |||||||||||| | ||   ||||| ||  |     ||  |  |   |    |    |    | |      | | |  |     ||||   || |   | |   |||||
---TCAGAAAATGAACCCTTCCAACCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGgtacgtatt--ataattatact-----atgtatattacatgttttcattaaccaattaagtaattctcaaactaaattatctgatttattattgttgcag

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G39250.1 (Glycine max), 5'ss of exon 4
-GGCTTCCAAATTGAGTCCTCCCAAGA--CTATTGATCAGTCCGCAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGgtaagaatccaataataatgtttgaaaattcaactagaacccctctgatttgtagtcgtcacagtgtggattgggattaatcgaatatgtgtaactgcag
 |||     | ||||  | | | | |   | ||  |  ||||||  || ||| | ||||| ||||| || ||||| ||||||||||||||||| || |||||||||   ||  | | |||  | |||  |   ||| |        | |  |   |||   | ||  | |  |||   |||    |                 
TGGCAAATTA-TTGAACCATACGACGGATCCATCCACTAGTCCG--GAAGCCGCTATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCACCCATGgtag--attaatttatatagattgtcatagcaagtgatgaatatatagt--atagctctaact-tattaattattatttccag-----------------

upper sequence: Vv10s0116g01200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G01490.1 (Glycine max), 5'ss of exon 4
GGCTTCCAAATTGAGTCCTCCCAAGACTA---TTGATCAGTCCG------CAGAGGCCACAATGAGGAAAGCCCGCGTCTCGGTTCGTGCCCGATCAGAGGCTCCCATGgtaagaatccaataataatgtttgaaaattcaactagaacccctctgatttgtagtcgtcacagtgtggattgggattaatcgaatatgtgtaactgcag
          ||||  ||| ||||  |||     ||||  |||       |||| ||| | ||||| ||||| || ||||| || |||||||||||||| || ||||||||| ||||| ||| ||    | ||||   |  | ||| |   |    | |  |     | | ||| | | |     |||||      | | ||  | |||
---------GTTGAACCCTTCCAACCCTACGACGGATCCATCCACTAGTCCAGAAGCCGCTATGAGAAAAGCTCGTGTCTCAGTCCGTGCCCGATCAGAAGCACCCATGgtatgaatc-aatcat----tctgaattatagattagcatagc---aagtgatgaatat-atagtatagctctaacttaattat---tatttatttccag