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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAGgtcggttttaattctttattttttctatttcgttggtattcattgatattccaagttttggtttgaagaaactaggaggagtgtcactgcatattcattcagtatgtgcacttaaaaaacatttcgatttcag

Basic information

species Vitis vinifera
transcript Vv10s0071g01100.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721026|gb|FC069980.1|FC069980
EST:     ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG                         GGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT
genomic: ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAGgtcggtttta ... tcgatttcagGGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT
EST: gi|294965582|gb|GW837181.1|GW837181
EST:     ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG                         GGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT
genomic: ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAGgtcggtttta ... tcgatttcagGGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT
EST: gi|161717651|gb|FC066276.1|FC066276
EST:     ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAG                         GGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT
genomic: ATGATTGCTGGGCTGAGATAAACCGTGATGAAAAGgtcggtttta ... tcgatttcagGGTACTCTGGTTGCTAAGAAATCCACATTCCCATCGGGCATTAAAGCTCTT