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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGTTGTCATGGATATGTCGGGGTATTCTGAAAAAGGTTTCAAGAGAAAACTTGCTGTCCAGGCCCTGTTTGGCAAGGTTTTTTATCTATCTGAGgtaagctgccgagctttagtttggtgacctttattcaaccactcaactcctttcagtttttctatattacatttttatacctatagccatgcatttcctt...

Basic information

species Vitis vinifera
transcript Vv10s0071g01010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g01010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G00210.1 (Glycine max), 5'ss of exon 4
GTCCTGTTGTCATGGATATGTCGGGGTATTCTGAAAAAGGTTTCAAGAGAAAACTTGCTGTCCAGGCCCTGTTTGGCAAGGTTTTTTATCTATCTGAGgtaagctgccgagctttagtt--tggtgacctttattcaaccactcaactcctttcagtttttctatattacatttttatacctatagccatgcatttcctt
| ||| |||| |||||||  || || ||| ||||||||||||| ||||||||| | ||||| |||||||| ||||| ||||| || ||||| || ||||||||   ||       |||   |  |||     ||||  |    | |   || |  || | | || || | ||    |    || |    |    | || |
GCCCTATTGTGATGGATAAATCAGGTTATACTGAAAAAGGTTTTAAGAGAAAAATAGCTGTTCAGGCCCTTTTTGGAAAGGTCTTCTATCTGTCCGAGgtaagtaaccacaaaacagtcaattttgatacagattctgctcgcctatatctgt--gtgtatgtaaataaaataagcacttttaaatgtctttggtaccat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122691664|gb|EC981912.1|EC981912
EST:     GAAAACTTGCTGTCCAGGCCCTGTTTGGCAAGGTTTTTTATCTATCTGAG                         CTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTT
genomic: GAAAACTTGCTGTCCAGGCCCTGTTTGGCAAGGTTTTTTATCTATCTGAGgtaagctgcc ... tttcaaccagCTTCCAGAGTTCTGTTCAAGGGACAGCTCCTTAGTCATCAAGGAAATATTT