Sequence
atgc intronic sequence ATGC exonic sequenceGTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g43570.1 (Oryza sativa), 5'ss of exon 4
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaa-gtgatttactgaattgtactcaacaaagcttt
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GTGCGTCTTTGTAGAGAGAAGGCGTCTAAGAATGTATATGCAATGAAAAAGCTTAAGAAATCTGAGATGCTTCGTAGGGGCCAGgtaccatgtatg--gtctg-gctgcattattttgtagtttctatttctgatttacacgtatgctttgacatggttgtacaaatttcag-------------
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G375904_T01 (Zea mays), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt-
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GTGCGTCTT-GTAGAGAGAAGGTCTCTAAGAATGTTTATGCAATGAAAAAGCTCAAGAAATCTGAAATGCTTCGTAGGGGCCAGgtaccat-----------gtacggtctttctgcattgt---ttggcattctctatttctgttttgcttgttatcctctgacatgtgtaca-tatatttcag
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G049088_T02 (Zea mays), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt
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GTGAGACTTTGTAGAGAAAAAGCTACATCCAATGTGTATGCAATGAAAAAGCTTAAGAAGTCCGAAATGTTACGAAGAGGGCAGgtattccatga--------tgttaactctagtaactgt-----actgtgttatcgagctaacttctattttctccaatgcattgtttttag---------
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggt-catttgtgctgcttttttcc-----tttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaa---caaagcttt-------------------------------------------------------------------------------------------
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GTGAGGTTATGCCGAGAGAAATCAAGTACAACTGTGTATGCCATGAAGAAGCTGAAGAAGTCCGAGATGCTTCGGAGAGGCCAGgtacgtcacgtgtatatatgtggaagttgtttatagaattgtatctgtctttatttgccgtttgccaaaatcatataactctgaagaatcgactgaaggtcaaatctggagttattgttatgttttgttactcactttagtaatcgaaatctgaaggggattactttaccattttaatcaatggataaacactattgcag
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S86_100V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggt---catttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaa-gtgatttactgaattgtactcaacaaagcttt
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GTGAGATTATGCAGGGAGAAATCAAGTACGACTGTGTATGCTATGAAAAAGCTGAAGAAGTCTGAGATGCTACGAAGAGGCCAGgtaattcatgtgtatacgtttaagttgtctgtgtgatcta-atttttatttgaagtaccggttgctagaagcatggaacattgaag---aagctgtaaagctct
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttt-tttcctttgtgaataaatatgatctat--aaataaataacaagtgatttactgaatt--gtactcaacaaagcttt
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GTGAGGTTGTGCAGAGAGAAAACAAGTTCTACAGTCTATGCCATGAAAAAACTGAAGAAGTCTGAGATGCTTCGAAGAGGCCAGgtacttt---aatc-tttgtatttttctatttgcttgatagaatcgtgtccactgtggagatcactttcaaaagatatcggatgctaggaaaacgggagaaatt-
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ16108 (Selaginella moellendorffii), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt
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GTCCGGCTCTGCAGAGAGAAATCAACAGGATATGTCTATGCCATGAAAAAACTCAAGAAATCGGAGATGCTGCGAAGGGGCCAGgtatgatctttgc--tttttaccaacatattcaagtgcttacgattttaatattccag------------------------------------------
upper sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ08009 (Selaginella moellendorffii), 5'ss of exon 3
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt
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GTCCGGCTCTGCAGAGAAAAATCAACAGGATATGTCTATGCCATGAAAAAACTCAAGAAATCGGAGATGCTGCGAAGGGGCCAGgtatgatctttgc--tttttaccaacatattcaagtgcttacgattttaatattccag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110713213|gb|EE088935.1|EE088935EST: TGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAG GTGGAACATGTTAAAGCTGAACGGAATCTTCTTGCTGANGTTGACAGTGCT
genomic: TGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctg ... ttttttgaagGTGGAACATGTTAAAGCTGAACGGAATCTTCTTGCTGAGGTTGACAGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAGACTTTGCAGAGAAAAAACTACTGGCCATGTGTATGCCATGAAAAAGCTCAAGAAATCAGAGATGCTTCGGAGGGGCCAGgtaccttctgggtcatttgtgctgcttttttcctttgtgaataaatatgatctataaataaataacaagtgatttactgaattgtactcaacaaagcttt
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaag