Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatcatgcatcatagtgtatgtgttttcttttttatctttttattttttatttttgtactggaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G13700.1 (Glycine max), 5'ss of exon 4
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatcatgcatcatagtgtatgtgttttctttt--ttatctttttattttttatttttgtactggaaat
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GTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGgtaaaccattcacatgtaccac-cattcataggttgtctattgttatggaaggcatttctgccttggatcaaagacttattttccctctaattgtaaaata-
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G02830.1 (Glycine max), 5'ss of exon 4
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtag-ctgccctattattgcttcgtattta-gttatcatcatgcatcatagtgtatgtgttttcttttttatctttttattttttatttttgtactggaaat
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GTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGgtaaaccattcataggttgtctcattgttatggaatgcatttctgcccggatcaaagaattatttttcctctaattgtaaaatattttatttgatttaat--
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G29940.1 (Glycine max), 5'ss of exon 2
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatcatgcatcatagtgtatgtgttttcttttttatctttttattttttatttttgtactggaaat-
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GTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGCTCTCAAATATCAAAGgtaactattcctaatccacttaagagtttagaaagaagattt-tcactttactaataaggaatttaaactgagttccttcttcgtttgtctacaacaaatt
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G13070.1 (Glycine max), 5'ss of exon 2
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgc-cctattattgcttcgtatttagtt--atcatcatgcatcatagtgtatgtgttttcttttttatctttttattttttatttttgtactggaaat
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GTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGgtaactattcctgatccactttactaaatagtttagaaaagaagattttcactttactaataaggaatttaaactgagttccttcttcatttgt-ctagaa--
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G21160.4 (Arabidopsis thaliana), 5'ss of exon 3
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctat-tattgcttcgtatttagttatcatcatgcatcatagtgtat--gtgttttcttttttatctttttattttttat-ttttgtactggaaat-------------------------------------------------------------
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GTCAGCTAATATTGGAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAAAGgttgtgactctttgcttctctttctagttttggtttatctttggtgaaaatttgccattggattccattaagatggcttacaaataatattgtggatttgttatctcgctccacttcttcttacagaatcttttgcaagtgtatttatagttttcaactttccag
upper sequence: Vv10s0003g04900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatc-atgcatcatagtgtatgtgttttcttttttatcttttta---ttttttatttttgtactggaaat-------------
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ATCAGCAAATATCGGAGTATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGgtgatatatcttctttgctctattacatattggttgtccatttgttgtctcttttcttcattactcaagacaaaattagatctctttcgttgtgtactcattgtttggtttctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719936|gb|FC066718.1|FC066718EST: GCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAG GTGTTGTCTGTGGCATTGGATGATTGGTCTGATGATGAAATTGATGCGATG
genomic: GCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccc ... gactgttcagGTGTTGTCTGTGGCATTGGATGATTGGTCTGATGATGAAATTGATGCCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGCAAATATTGGAGTCTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACACATATCTCAAAGgtagctgccctattattgcttcgtatttagttatcatcatgcatcatagtgtatgtgttttcttttttatctttttattttttatttttgtactggaaat
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggaaa