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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGTGGAGATCTGACACCTGCAAGGGCATTTACATCACTTTCTCTCTTTGCTATGCTACGATACCCTTTATACATGCTTCCTACTTTAATAACTCAGgttgtctatttatctcatcttatgtgttgttaatgcattatgttatttgtgatatttcttcgagatatgtagcttgcttttgtaactaattagttgttgt...

Basic information

species Vitis vinifera
transcript Vv10s0003g04450.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 15
GCTTGGTGGAGATCTGACACCTGCAAGGGCATTTACATCACTTTCTCTCTTTGCTATGCTACGATACCCTTTATACATGCTTCCTACTTTAATAACTCAGgttgtct----atttatctcatcttatgtgttgttaatgcattatgttatttgtgatatttcttcgagatatgtagct-tgcttttgtaactaattagttgttgt-
|||||| |||||| ||||||| ||||||||||| ||||| |||||||| |||||  | ||| |||  ||| |   || ||| || | | | |||| ||||||| | |    | | ||| | | ||  ||  | ||    ||||    | |   |   |||   | |  ||   ||| | |  | |  |  ||| ||   |  |   
GCTTGGAGGAGATTTGACACCAGCAAGGGCATTCACATCTCTTTCTCTATTTGCAGTTCTAAGATCTCCTCTCAGCACGCTACCAAATCTTATAAGTCAGgttattttaacaatcatccccttttcagttatatttgatcattcatgtgtcaatag-attcactggtcatcattagttatcgtctctttgctatttctctacttag

upper sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 17
GCTTGGTGGAGATCTGACACCTGCAAGGGCATTTACATCACTTTCTCTCTTTGCTATGCTACGATACCCTTTATACATGCTTCCTACTTTAATAACTCAGgttgtct----atttatctcatcttatgtgttgttaatgcattatgttatttgtgatatttcttcgagatatgtagcttgcttttgtaactaattagttgttgt-
|||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||| ||  | ||| |||  ||| |  ||||||| || | | || |||  |||||| | |    | | |||| | ||  | ||   || || ||| ||||      ||| ||||  ||   |||| ||| |  | | | |  ||| ||   |  |   
GCTTGGAGGAGATTTGACACCAGCAAGAGCATTCACATCTCTTTCTCTCTTCGCAGTTCTAAGATTTCCTCTTAACATGCTACCAAATCTACTAAGCCAGgttattttaacaatcatctta-ctggtctgcatttgatccatcatgt-gccaatga-atttactcttcatatttagttatcctcttttgctacttctctacttag