Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttctactactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttctactactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
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TGAAAAACCCTTTCTTGAATGTACTTCTGAATTTTATGCTACGGAAGGTGTTAGATATATGCAACAATCTGATATTCCAGATTACCTGAAGCATGTGGAGgta-aggatatatttccttatgttcttc------atgttatctactcatgtagaaccagtcaggcacacc-atttaactgataatacgcacctgagctgtgcag----------------------------------------------------------------------
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttctactactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag------------------------------
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TGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGCGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGgtg---ttttcttttccttaacccattgtattttatcatattggcttcagtta---ttttggtgattctttaataaatggattgtgtcattca-atttcagttttatctgacactctgactgt--aaaagttatctttgtctatccttcccttgtccacattgtatacttactgcagggattttttgggtactcatttctgcag
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttctactactataagtgatattctctgctctttctcacc-ttttattgtatttctagtttattggctg-tgcaaatcacattt-atattctagctgacagaatgttcattcacaatttatgtt---cacgtctagaagatatgagggtgatgctttcttgcag----------------
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TGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGgtgttttcttttccttaacccattgtattatcttattgtctttagttattttggtaattctttaataaatggattatgtcattcaatgtcagttttatctgacactctgacaataaaagttatctttctttgtctatctttcccttgtccacattgtatactcactgcaggtatttttgggtactcatttctgcag
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgtttttt-cttctac-tactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
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TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttcccttacttttgtgtattata-gttttagctttaatcattgacattcccatatgctgcttttgtattttttaacaaatggatcatgccaa---------------------------------------------------------------------------
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttt-tttcttctac-tactataagtgatattctctgctctttctcacct-tttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
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TGAGAAGCCATTCCTTGAGTGCACATCCGAATTTTATGCGGCGGAAGTTATGAAATACATGCAGCAATCAGATGCTCCAGATTACTTGAAGCATGTTGAGgtgcttcttttccctttcttttgtgtattataattttagctttaatcattgacattcctatgtgctgcttttgtaactt-ttaacaa-atggatcatgccaa---------------------------------------------------------------------------
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 4
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttcta--ctactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
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TGAGAAACCTTTCCTTGAAGGGACCTCTGAATTTTATGCCGCTGAAGGAATGAAATACATGCAGCAGTCTGACGTTCCGGAGTACCTGAAGCATGTTGAGgtgccttgcatgacttcatatagtttccttatgattagctgcactacaggttaatagtctttctaaggtttcta-ctggtgattggtgcag-------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110721045|gb|EE097595.1|EE097595EST: TGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAG ATAAGGTTGCATGAAGAACATGAAAGATGCTTACTGTATCTGGATGCAAGC
genomic: TGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttg ... tttcttgcagATAAGGTTGCATGAAGAACATGAAAGATGCTTACTGTATCTGGATGCAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAAGCCATTCCTCGAGTGTACGTCTGAATTTTATGCTGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCGGATTACTTGAAACATGTGGAGgtgcaatttgttttttcttctactactataagtgatattctctgctctttctcaccttttattgtatttctagtttattggctgtgcaaatcacatttatattctagctgacagaatgttcattcacaatttatgttcacgtctagaagatatgagggtgatgctttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG