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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAAGTCTCTTCTTCCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGgtaattgaacttcttactttggacctgtaatatatctgttatttttgcaatctgtattgtgcatgtggccaggattttcatattctaacagaagatctgaaaattgtataccatgcttcctcgcgttattgcctgtccag

Basic information

species Vitis vinifera
transcript Vv10s0003g03500.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27586367|gb|CB009062.1|CB009062
EST:     CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG                         GGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
genomic: CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGgtaattgaac ... gcctgtccagGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
EST: gi|37184610|gb|CF603964.1|CF603964
EST:     CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG                         GGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
genomic: CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGgtaattgaac ... gcctgtccagGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
EST: gi|110732627|gb|EE108077.1|EE108077
EST:     CCTTCTTTTGAGTCTGCCGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG                         GGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
genomic: CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGgtaattgaac ... gcctgtccagGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
EST: gi|37189203|gb|CF608552.1|CF608552
EST:     CCTTCTTTTGAGTCTGCCGACATGCGTGCCTTAGGGGAGAGTTTAAGTAG                         GGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT
genomic: CCTTCTTTTGAGTCTGCTGACATGCGTGCCTTAGGGGAGAGTTTAAGTAGgtaattgaac ... gcctgtccagGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGACAGCATCAAGGGTTT