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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatatcaaaacactattacattattacatacagtaaacatatggatggtgctgaaatggatcattatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g03280.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 4
AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatatcaaaacactatt-acattattacat-acagtaaacatatggatggtgctgaaatggatc--attatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag
|||||||||||| ||||||||| |  |||| ||||||||||| |||||| |||| ||||| ||||| |||||||| |||||||||||||| || || |||||| ||  ||  | | |   || | |  |  | || |  | | |  | |  |    |   ||| | |||| |||  ||||||||| | | |  |    |                                                  
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagt-agattttttatggcattttggatttcatcaattgataaaagatttcaaaaaaatgcagcaatgcatctcattatctactaatgtcctcccattt------------------------------------------------

upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G10130.1 (Glycine max), 5'ss of exon 4
AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatatcaaaacact--attacattattacatacagtaaacatatggatggtgctgaaatggatcattatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag
|||||||||||| ||||||||| |  |||| ||||||||||| |||||| |||| ||||| ||||| |||||||| |||||||||||||| || || |||||| || |    |      |   |  ||| ||| | |  ||| |   | || |   |        ||||| | || |   |  |||| | |  |  || |                                               
AAATTTGAAGCTAGCAGAAGATCTGACTAAAACATGCTTTGAAATGTATGCAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtggatttttatggcattttggatttcatcaattgataaaa-gatcacaaaaaaaaataaaaaatgcagcaatgcatctcattatctactaatgtcc----------------------------------------------

upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G30000.1 (Arabidopsis thaliana), 5'ss of exon 4
AAATTTGAAGCTTGCAGAAGATTTAGCTAAGACATGCTTTGAGATGTATTCAGTGACTTCTACTGGGCTTGCTCCAGAAATTGCTTACTTCCACACAGAGgttggttggacatat-caaaacactattacattattacatacagtaaacatatggatggtgctgaaa---tggatcattatctaccattttattttgctgccactaaaaactgttaaagagatttgacatctggttccaattgacgcag
|||| |||| ||||||||||||||||| || ||||||||||||||||||  ||| ||| | ||||| ||||||||||||||||||||||| |||||| ||||  |||     | | |      | |  || |||||     |  |   | | | | |  |  | ||    |||||  | ||  | ||                                                              
AAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTTGAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAGgtaagttttgtgtgtacttttttccaaaacgttattgtcatccttgctcttcttgttttttgttaagtcttggattttaataaagcag-------------------------------------------------------------