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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCACTTCTGCCCTTCATCTGGGAATTTCACTACCCGTGAATATCGAGATATTACGTCCAATATGGGTTTGCCCACAGGGTCTGTGTATCCTACACGGgtaatgtcatgtcatgtcattttctactcaattgttttttatatatataacataagggatagcctttcaagagaaacacactgtttcag

Basic information

species Vitis vinifera
transcript Vv10s0003g03080.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 4
TGTTCACTTCTGCCCTTCATCTGGGAATTTCACTACCCGTGAATATCGAGATATTACGTCCAATATGGGTTTGCCCACAGGGTCTGTGTATCCTACACGGgtaatgtcatgtcatgtcattttctactcaattgttttttatatatataacataagggatagcctttcaagagaaacacactgtttcag
|||||| || |||||  |  | || |  |||||| | || |||||||| |||||||| || ||| |||||||||||||||| ||||| || |||||| ||||||| | | |     | || |   |   ||||    | ||   |    |||      ||    |||   ||  ||  |  |||   ||
TGTTCATTTTTGCCCCACCACCGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGTTTGCCCACAGGATCTGTTTACCCTACAAGGgtaatctaaagctccttgatgtctaatataatt----tataatcacccgaca------atgaaatttactgattaaagctttgtggtag

upper sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G08920.1 (Glycine max), 5'ss of exon 4
TGTTCACTTCTGCCCTTCATCTGGGAATTTCACTACCCGTGAATATCGAGATATTACGTCCAATATGGGTTTGCCCACAGGGTCTGTGTATCCTACACGGgtaatgtcatgtcatgtcattttctactcaattgttttttatatatataacataagggatagcctttcaagagaaacacactgtttcag
|||||| || |||||  |  | || |  |||||| | || |||||||| |||||||| || ||| |||| ||||||||||| ||||| || |||||| ||||||| ||| | |   | || |   |    ||| |  |      |    ||  | |  ||   ||  | | ||     |  ||||  ||
TGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGATTGCCCACAGGATCTGTTTACCCTACAAGGgtaatctcaagccccttgatctctaatatcattataatc-----acccgac-catgaaatttactgactacag-----ctttgttgtag