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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtccactaactggtaaatatattttttgttcttag

Basic information

species Vitis vinifera
transcript Vv10s0003g02830.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtccactaactggtaaatatattttttgttcttag----------------------------------------------------------------------------------------
 ||   |    | || |  || ||||| ||||||||  ||||||| |||||||| || || ||||| || |||||||| ||||| || |  ||||||||||||| |  || |   ||| | | ||    |  |    | |    |   |    |  || ||  |      | |   |||  | | |                                                                                          
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaatt-cggttatggatccacatttcctccctttggaactgcatgagtgagcagtacatataccgtgttcctttcatacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttc-------tccgtccactaactggtaa----atatattttttgttcttag
 || |  | |||||||||| ||||||| |||||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||| ||| || |||||||| |     |     |  |  | || | |||   ||  | || ||         |  |||||   | |   ||    | ||||||     ||| ||
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgtaatctcgaatactagcttttgtagtggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttcttt----ctccgtccactaactggtaa----atatattttttgttcttag
 || |  | |||||||||| ||||||| |||||||| |||||||||||||||||||| || ||||| || |||||||| |||||||| | ||| || |||||||| |     |     | ||    || | |||   ||  | || | |     |  |||||   | |   ||    | ||||||     ||| ||
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtccactaactggtaaatatattttttgttcttag
 || |  | ||| | ||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||||||||| ||||||||||||||||| | ||||| || || |    |||  |     | |  |||| |||      | |      |  | ||       ||  ||| | |        
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttcttacttccatttttttc-cgtt--ttttgtagtgtcgatgtaataaacttcaaaacttgggat-cattctctag------

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 8
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtccactaactggtaaatatattttttgttcttag
||||| ||  || || || || || ||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||||| |||| ||| || | |||||||       |    |||| |  | ||  ||||  |  ||| || ||      | | ||||   |||||||||     || | ||
TAAACCAGACCTTCCACGTCTACACGAATGGCATTTCAGATCTGGACTTGATCGCTACATATGGATCATCGGCATGATATATGCATATTTTCATCCCACTgtaattcca---gaaccatggtgctttcatt-ttttccatatctcctctcgaaagacgc-aact---aaatatattggggatt-tcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgt-ccactaactggtaaatatattttttgttcttag
||||| ||  || || |   | ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||||||||||||||  || || | ||||| | ||   ||      |     |  |  ||| ||| ||  || |   || | | | |||    |   |  |  ||||  | | ||
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttg--aacctacagccttctcgttttttcatatcttctcatgaaccctacgattaaaatattttttgacattttcatttcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S74_21V6.1 (Physcomitrella patens), 5'ss of exon 9
TAAACAAGGTCTCC--CTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTA----ATgtaatttttttcaagtattg---gtacaatgatgattttat-agctcttct-----------ttctccgtccact---aactggta-aatatattttttgttcttag-------------------------------------------------------
  ||  ||  || |  ||   || || ||||||||||| ||||||||||| || || ||||| ||||| || || ||| | |||||||||| ||| ||||    ||||  ||||   ||  |  |    ||| ||  ||| |||  | || ||   |           ||  |  ||| ||   |  |  || |  ||  | ||| ||   |                                                        
--AAAGAGCCCTGCGCCTTTGCTTCACGAATGGCATTTCAGATCTGGGCTCGACCGATATATCTGGATTATTGGCATGCTCTATGCCTATTTTCATCCTACGgtatgtcgttttgaccaccttctaaccgtagaaaaatggtttggttagatcccgtaagagtgagtgttgcctttccgctgtgacttactacagaattgtatttattgcaaaagtttgtaagtttcgcatgattgaacatctttatttgtgaactacatgtttccag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 5'ss of exon 9
-TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttctttctccgtcc--actaactggtaaatatattttttgttcttag------------------------------------------------------------------------------------------------------------
    ||   |   |||| | || |||||||||||||||||||| || || ||||| |||||||||||| |||| ||| | ||||| ||||  || || |  |||  ||  ||     |     |   |   | |   |  ||  ||    |    |||  | ||| || | | |    ||||  || | |                                                                                                             
TGCGACCCCGCAGCCCTTG-CTTCATGAATGGCATTTTAGATCAGGACTGGATCGATATATTTGGATCGTCGGCATGCTCTATGCTTATTTCCATCCAACGgtatgttgatttggtcaccta-attctatcggtagaagggcgatttacgcatgttcctgaataaatg-tgagtggtcttttcattttgacacgtagtacagatacgcagttatggctacggcgcgttaatttttcgaaattacagagggctcacttccacatatttgacaatgcttttcatgaacttcatgttggcag