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CAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggcttttctgtatgttgatacaattattagttttctaacaagcacagaattatacaaaaaattgccaaagggggtgaatcctagtagaaaagaagtg...
species | Vitis vinifera |
transcript | Vv10s0003g02590.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|161714829|gb|FC063277.1|FC063277
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|351045795|gb|FQ440980.1|FQ440980
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|110384739|gb|EC949198.1|EC949198
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|349832459|gb|FQ421020.1|FQ421020
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|110693825|gb|EE070405.1|EE070405
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|349808085|gb|FQ402476.1|FQ402476
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|110391854|gb|EC956857.1|EC956857
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCCEST: gi|110699183|gb|EE075958.1|EE075958
genomic: AACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
EST: ACAAACTGTCATCTTCACAG ATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
genomic: ACAAACTGTTATCTTCACAGgttggctttt ... atattttcagATTTTAGATCCTTTGAGAGCAATGGTCACTGGTGCTCCTTTGGAAGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGATAACATTCTAGCTAGGGCTGCATCTATATATGGTGATGGTCTTAAACATATAGCAAAAGAGCAAGAAGACTTGAACAAACTGTTATCTTCACAGgttggcttttctgtatgttgatacaattattagttttctaacaagcacagaattatacaaaaaattgccaaagggggtgaatcctagtagaaaagaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa