1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattttgtgtttgatgcatagtagaagcatctgcctgccctttctggttccaattcatcaaaagcaagggcctacataatgttctatttttctgttacag
species | Vitis vinifera |
transcript | Vv10s0003g02250.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAEST: gi|351043287|gb|FQ444008.1|FQ444008
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|351024812|gb|FQ430637.1|FQ430637
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACGCGATATGAEST: gi|30129785|gb|CB915124.1|CB915124
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110718702|gb|EE095839.1|EE095839
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGGATTTCCGGATTACAGCGAA-GCTTAGGCTTCCTATTTCAT GAGGATGCAAAGAA-CTTGACAGAEST: gi|33403709|gb|CF209336.1|CF209336
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|351041261|gb|FQ447388.1|FQ447388
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCEST: gi|351013219|gb|FQ424924.1|FQ424924
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCC
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACGCGATATGAEST: gi|349830175|gb|FQ420435.1|FQ420435
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|32245049|gb|CD710868.1|CD710868
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110401164|gb|EC967763.1|EC967763
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110372842|gb|EC937036.1|EC937036
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|30126189|gb|CB911528.1|CB911528
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110370659|gb|EC930270.1|EC930270
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|110729229|gb|EE105336.1|EE105336
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGEST: gi|32245302|gb|CD711121.1|CD711121
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTG
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|351027029|gb|FQ439889.1|FQ439889
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAACTGCCAAGAATCGATACACCATATGAEST: gi|110722220|gb|EE098261.1|EE098261
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: TGGAAGGGATTTTTTGGATTACAGCGAAAGCATAGGCCTT-ATATTTCAT GAGGATGCCAAGAAGCTTGEST: gi|349809854|gb|FQ398479.1|FQ398479
genomic: TGGAAGGAATTTCT-GGATTACAGCGAAAGCATAGGC-TTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTG
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|26263843|gb|CA814906.1|CA814906
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|27586581|gb|CB009276.1|CB009276
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|351012448|gb|FQ427049.1|FQ427049
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACGCGATATGAEST: gi|27583054|gb|CB005749.1|CB005749
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|349825143|gb|FQ415690.1|FQ415690
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|110402114|gb|EC968749.1|EC968749
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAAGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110713254|gb|EE089012.1|EE089012
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: ATGGAAG-AATTTCTGGATTACAGCGAAAGCATAAGGCTCC-TATTTCAT GAGGATGCAAAAAAGCTTGAC-GAAGCTGCCAAGAATCGAEST: gi|110367998|gb|EC931958.1|EC931958
genomic: ATGGAAGGAATTTCTGGATTACAGCGAAAGCATA-GGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGA-GCTGCCAAGAATCGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|110401693|gb|EC968309.1|EC968309
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|110426279|gb|EC992681.1|EC992681
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|110360035|gb|EC922556.1|EC922556
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|351030954|gb|FQ438990.1|FQ438990
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACCATATGAEST: gi|110427923|gb|EC994379.1|EC994379
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGTGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGAEST: gi|351012919|gb|FQ430482.1|FQ430482
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
EST: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCAT GAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
genomic: AATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattt ... tctgttacagGAGGATGCAAAGAAGCTTGACAGAGCTGCCAAGAATCGATACACGATATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATAGGCTTCATATTTCATgtaaggattttgtgtttgatgcatagtagaagcatctgcctgccctttctggttccaattcatcaaaagcaagggcctacataatgttctatttttctgttacag
- - - - - - - - - TGGAAG
- - - - - - - - - - AAGGAA