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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTCAATACCATGAGAGCAATCCAAGGTGCTCTGATAGTGGCATCAAGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaaatgaaagttgtacattcataatcaagaaaatgagctttactggtagattttctttgtgttcaaatgtggacattttttggtgtctcag

Basic information

species Vitis vinifera
transcript Vv10s0003g01460.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G12360.1 (Glycine max), 5'ss of exon 4
GATTTCTCAATACCATGAGAGCAATCCAAGGTGCTCTGATAGTGGCATCAAGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaa---------atgaaagttgtacattcataatcaagaaaatgagctttactggtagattttctttgtgttcaaatgtggacattttttggtgtctcag----
||||||| |  || ||||||||| ||||||| ||||| ||||| || |||||||||||||| ||| |||| |  |||||||||||||| || ||||| |||| |          ||| ||  || | ||  ||| |  || |    | ||| | |     ||||  | | | |  ||   |  |  |  |||    |   |     
GATTTCTTAGCACAATGAGAGCAGTCCAAGGAGCTCTAATAGTAGCTTCAAGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGgtgagttttattttatgtaaaatgca-atgtatactttagcatg-aaacttgaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcag

upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G06840.1 (Glycine max), 5'ss of exon 4
GATTTCTCAATACCATGAGAGCAATCCAAGGTGCTCTGATAGTGGCATCAAGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaa---------aatgaaagt---tgtacattcat--aatcaagaaaatgagctttactggtagattttctttgtgttcaaatgtggacattttttggtgtctcag
||||||| || |||||||||||| | ||||| ||  ||||||| ||||||||||||||||| ||| |||| |  |||||  |||||||||| ||||| |||| |         ||   ||||   |    |||| |  ||| ||  || | ||||| |    || ||    |   |  |  | | |     ||||||          
GATTTCTTAACACCATGAGAGCAGTACAAGGGGCAATGATAGTAGCATCAAGCATACAAATCATTTTGGGCTTTAGTCAGTTATGGGCCATTTGTTCTAGgtgagctctttctaactgaagtgcatagttattcttccaattaaagaattaagcttaatctatacatcaaatacttactgtattcttacttttttttatcag-----

upper sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G06750.1 (Glycine max), 5'ss of exon 4
GATTTCTCAATACCATGAGAGCAATCCAAGGTGCTCTGATAGTGGCATCAAGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaa---------aatgaaagttgta----cattcataatcaagaaaatgagctt--tactggtagattttctttgtgttcaaatgtggacattttttggtgtctcag
||||||| || |||||||||||||| ||||| ||  ||||||| ||||| ||||||||| ||||| |||| |  |||||  |||||| ||| ||||| |||| |         | |||||    ||    |  |    || ||  ||   |||||  ||    || ||    |   |  |  | | |     ||||||   |      
GATTTCTTAACACCATGAGAGCAATTCAAGGGGCAATGATAGTAGCATCGAGCATACAAGTTATTTTGGGCTTTAGTCAGTTATGGGGCATTTGTTCTAGgtgagctcttctaactgaaatgcatagttactcttccgattaaagaatgaagcttaatatctatacatcaaatacttactgtattcttacttttttttccag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30133322|gb|CB918661.1|CB918661
EST:     AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAG                         GTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGG
genomic: AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaaatgaa ... ggtgtctcagGTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGG
EST: gi|161716943|gb|FC068140.1|FC068140
EST:     AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAG                         GTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGG
genomic: AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaaatgaa ... ggtgtctcagGTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGG
EST: gi|161720822|gb|FC069587.1|FC069587
EST:     AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAG                         GTTTTTTAGTCCACTTGGAATGGTACC
genomic: AGCATACAAATTATTCTGGGGTACAGTCAAATATGGGCCATCTGTTCGAGgtaaaatgaa ... ggtgtctcagGTTTTTTAGTCCACTTGGAATGGTACC