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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAgtaagttcagaactacactactttattttaaagtggtgtgtaatatttgatagtgcataataatgggcatagcaatatattagtcatgcttgggatttct...

Basic information

species Vitis vinifera
transcript Vv09s0054g01570.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G00300.1 (Glycine max), 5'ss of exon 15
GCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAgtaagttcagaactacactacttta-ttttaaagtggtgtgtaatatttgatagtgcataataatgggcatagcaatatattagtcatgcttgggatttct
                              | || ||||| | |||||| ||||||||||||||||||| ||||||  | ||  |||| |||||| |||||| |||  | | ||||  ||   || ||  |   ||   |  |   | ||| |||    || |         |||      ||| |||   | |  ||   
------------------------------ACGACTTCAGAAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAgttagtctacatctactatatagtacttccattttgacatagatgttgtgacagtatgaaaaacatatttctgcatatcgataggcatctatagcgttaa-

upper sequence: Vv09s0054g01570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G24170.1 (Glycine max), 5'ss of exon 11
GCTCACTACATCAGTTCTTACACCTGTCAGATGATTTCAGCAGACCACTTACTTGGAACACCAGAGTCAAAATTGCTCTTGGCACAGCCCGGGCTATTGAgtaagttcagaactacactactttattt-taaagtggtgtgtaatatttgatagtgcataataatgggcatagcaatatat-tagtcatgcttgggatttct
|||| || ||| | || |||||| | || || || ||||||| ||| || ||||||||||||||||||| ||||||  | ||  |||| |||||| |||||| |||  | | ||||  ||   || ||  |   ||  ||  |   | ||| |||    || ||      |    ||||   ||| |||   | |  ||   
GCTCCCTCCATGACTTTTTACACTTATCGGACGACTTCAGCAAACCCCTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAGCAGCTCGGGCTGTTGAgttagtctacatctactatatagtacttgcattttgacgtagatgttatgacagtatg-aacaacatatttctgcatatggataggcatctatagtgttaa-