1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCATGAGCTTGCTTCGCAGATCTGGCTGGCTGTTCTTGACAATTTGGAGGAAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatctaatcagaaatcactctttctattactttatgattatacttgatcaaaataagattgatttactgagataatactacacacatacatatat...
species | Vitis vinifera |
transcript | Vv09s0054g00830.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTGEST: gi|110402927|gb|EC963816.1|EC963816
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTG
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTGEST: gi|29782551|gb|CB347968.2|CB347968
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTG
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTGEST: gi|71889594|gb|DT038649.1|DT038649
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTG
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTGEST: gi|28969016|gb|CB348049.1|CB348049
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTG
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTGEST: gi|71882022|gb|DT031077.1|DT031077
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCCATATCCGTACTCAAGATCGATTAAAGTCCAGTGGAGGGTG
EST: AAAATCACAACACATTTTTCTTACTAAAACGATTCGCACAAGAGGGAGAT GTTTTTCTTCC
genomic: AAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatct ... ttttcttcagGTTTTTCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGAGCTTGCTTCGCAGATCTGGCTGGCTGTTCTTGACAATTTGGAGGAAAATCACTACACATTTCTCTTACTAAAACGATTCGCACAAGAGGGAGATgtaagcatctaatcagaaatcactctttctattactttatgattatacttgatcaaaataagattgatttactgagataatactacacacatacatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagataa