Sequence
atgc intronic sequence ATGC exonic sequenceATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 4
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag------
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ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACACTATATATTATGGGTCTCAACGAACAGTTTCAGAAAGCACGAGAgtgagtgt-aacttttgactcta--taatatgaacaagt--gatcttgt-tctttttttgcttcactcatatctccatatatgtttggaatcaatagtgattaggt
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 3
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag------
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ATGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATAGATTCTCTTGATACGCTATATATTATGGGTCTCAATGAACAGTTTCAGAAAGCACGAGAgtgagcgt-aactcttgact-----ctataatatgaacatgtgatcttgttctttttttgcttcactcatttctccatatatgtttggaatcaatagtggtgaggt
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagt----------------tttagctttctattgtcgtct--gtctcaattac---ttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag
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ATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATTCTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAGCCAGAGAgtgagtaattgcaggctcttcatttattcatatgtaactgttttcgtcccagttgcaaatccaactttttacttcttcat-ctttgctaatcttcatttgcttattgtcttttatttgcag
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G21160.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag-
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ATGGTGTTGACAGCTTTGGTGGCCTGGGTGCAACTATGATAGATGCATTAGACACACTATATATAATGGGTCTAGATGAGCAGTTTCAGAAAGCCAGAGAgtgagtagatttcttccatcctagccttttttaggaagattctttctggcttgacttgttctaaacaggc-ttgtctcatcttattgagaaaaatataagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583590|gb|CB006285.1|CB006285EST: GATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGA GTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTT
genomic: GATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagtttta ... ttcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGTGTCAATAGTTTTGGAGGTCTTGGAGCAACATTAATAGATTCTCTTGATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagttttagctttctattgtcgtctgtctcaattacttggattttatctctttttatgcagcagttgcattgttttactttttctctcatagtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc