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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgcttttgtgatgatag

Basic information

species Vitis vinifera
transcript Vv09s0054g00140.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgct-tttgtgatgatag
||| |||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||| ||||   |  | ||  |||||    |  | ||  ||||||    | ||   || ||||   || |         | ||| |   ||      || |   | || | |||||        
CCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgttt----gccaccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcag---

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTT---GACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgcttttgtgatgatag--------
||| ||  ||||||||||  | |||||||| ||||||||||| || |||||| | ||||||||||| | | |  |   || | ||||   ||||| |||      |||  | |  |    | || | || || |||    |    ||     ||      | || |  ||   |  || || |          
CCCAAACCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGTTACGGAAAGCTCAACAAGCAGAGGATTCCTCTTCAGAACAACAAAGTCATTGAGGAGgtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttacagctaatcaaattcttatttggcctattgttggtcaaccattag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgttttta----tgtcattctgtatcttg-----gttttctatgagcgattgtttgctt-tatcttgttgctaacctgcttttgtgatgatag
||| || |||||||||||  | || ||||| ||||||||||| ||||||||| ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||    ||  | |||  |||| |     || |||| |       ||     ||  ||  || |    ||||  |  |||  |   ||
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgttttta----tgtcattctgtatcttg-----gttttctatgagcgattgtttgcttt-----atct---tgttgctaacctgcttttgtgatgatag---
||| || ||||| |||||  | || ||||| ||||||||||| ||||||||  ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||    ||  | | |  |||| |     || |||| |      ||||||   ||     || |   || || |  ||  |||||||  |  ||    
CCCAAACTTGAACAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactgtacatctggttcctgtgttctgtttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcg-----attgtttgctttatcttgttgctaacctgcttttgtgatgatag-------------
||| ||||||||||||||  |||||||||| ||||||||||| ||||||||  | ||||||||||||| ||| ||||| |||||||| ||| | ||||||||   | ||    ||| |    | ||  ||| | | |      |||| ||| ||| |  | || || |  |  |||       |||              
CCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtgg---tctattctgtagtcctctgtaaacacttccattgcttg-tttgttctattacttagtttttttccctgacataacattcaatgccag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgt-ttgctttatcttgttgctaacctgcttttgtgatgatag---------------
||| ||||||||||||||   ||||||||| ||||||||||| ||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   | | |     | ||  ||| | |     |   ||||||  |  |  |  ||  | | ||||  | ||| |                
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccgg---ctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttatcttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||   || | | |  |  |  || ||  |     || |   | |  || | || | || || |||||   |||      
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtatt---gttaatttacaattctgtattacaaatttgaattaattcacta-catgcttctgacttgcttggatgacag---

upper sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttat-cttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| ||  |   ||| |  |  |   ||   ||       |  ||   |   | | || | || || |||||   |||      
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtt--tattttacaattc--ttccttacagattttaattaattcgctacatgcttcttacttgcttggatgacag---