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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag

Basic information

species Vitis vinifera
transcript Vv09s0054g00090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttttgagggattgtttgctatatcttgttgctaacctgct-tttgtgatgatag
||| |||||||||||||| || ||| |||| ||||||||||||||||||||| | |||||||| ||||   |  | ||  |||||    |  | ||  ||||||      | || ||||   || || |      | ||| |    |      || |   | || | |||||        
CCCAAATTTGAAGAGTGTCCGTGAATTGATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAAAGAATCCCTCTTACAAACAACAAAGTCATCGAGGAGgtttgc-caccttgaatctcacttgttctgcttttactgtgtcaattggtaccttacagtcttggtgtttgtatcag---

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G094051_T05 (Zea mays), 5'ss of exon 5
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatctt------ggttttttttgagggattgtttgctatatcttgt-tgctaacctgc-ttttgtgatgatag-----
||| || |||||||||||  | ||  |||| ||||||||||||||||||||| ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||      | |   |      ||||  | |     | || | |   | |  ||   || | | || |   || || || |       
CCCAAACTTGAAGAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAAGCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactctacatctggttcctgtgttctgtttatatatgacaatttacatgatgatctccaccttttggtgttctatcag

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttg-gttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag----------------------
||| || ||||| |||||  | ||  |||| ||||||||||||||||||||  ||||||||||||| |   |  || || |||||    |  | ||  |||||| ||      | |   |   | |  ||   | | |   ||  ||| | ||  |  |   |   ||   |||||||                        
CCCAAACTTGAACAGTGTCAGGGAGTTGATCTACAAGAGGGGCTATGGAAATCTGAACAAGCAGAGGATCCCTCTGTCCAACAACCAAGTCATCGAGGAGgtttgtaaacttggaactgtacatctggttcctgtgttctgtttatatttgtttatatttgacaatttacatgatgatctccaccttttgttgttctatcag

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttttgaggg-----attgtttgctatatcttgttgctaacctgcttttgtgatgatag-------------
||| ||||||||||||||  ||||| |||| ||||||||||||||||||||  | ||||||||||||| ||| ||||| |||||||| ||| | ||||||||   | ||  || |    | ||  | | | |        |||| ||| | | |  | || || |  |  |||       |||              
CCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGgtccgtgtggtctattctgtagtcctctgtaaacacttccattgcttgtt-tgttctattacttagtttttttccctgacataacattcaatgccag

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttttgagggattgt-ttgctatatcttgttgctaacctgcttttgtgatgatag---------------
||| ||||||||||||||   |||| |||| ||||||||||||||||||||  | ||||||||||||| |||||| |  |||||||| ||||| |||||||| | | ||   |      | ||  | ||| |     |   |||||   |  |  |  ||  | | ||||  | ||| |                
CCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCCTTAAATGACAACTCTATTGTTGAACAGgtctgtctggtgtaccggctagtcatctttaaatatctccattgcttgtttgttctattactcagttttttcgctgacataacattcaatgccag

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G23750.2 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcctgtatcttggttttttt--tgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||| | ||||||||||| |||||  | || |||||||||||  | || ||||| ||  |    |  |  |  || ||     |  |   |  ||  ||| ||   | | || || |||||   |||      
CCCAAATCTTAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGGACTGCTCTAACTGACAACTCCATCATTGAGCAGgtattgttaatttacaattctgtattacaaatttgaattaattcactacat---gcttctgacttgcttggatgacag---

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgt-ttttatgtcctgta--tcttggttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag
||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| || | | |  |  |  ||||  ||     |      |  || |||| ||   | | || || |||||   |||      
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacat---gcttcttacttgcttggatgacag---