1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttctaatagatcttttacatggttctatcgtcttccacatttacagatttgcttcttgggcagtatgcataacatcaatgtaattggtgcagc...
species | Vitis vinifera |
transcript | Vv09s0018g01710.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAEST: gi|352795514|gb|FQ480102.1|FQ480102
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAA
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGEST: gi|351042630|gb|FQ451045.1|FQ451045
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTG
EST: AGCTTTTTCCA-CCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAEST: gi|351053774|gb|FQ441540.1|FQ441540
genomic: AGCTTTT-CCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAA
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|349828848|gb|FQ419181.1|FQ419181
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|110728709|gb|EE104516.1|EE104516
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|351044071|gb|FQ452744.1|FQ452744
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGEST: gi|110365693|gb|EC929076.1|EC929076
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|349808023|gb|FQ402414.1|FQ402414
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTTCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAEST: gi|351037484|gb|FQ460683.1|FQ460683
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCA
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGGAAAAGCAATTGAAAGEST: gi|27583752|gb|CB006447.1|CB006447
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGG-AAGAGCAATTGGAAG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|30137999|gb|CB923337.1|CB923337
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAATG GCAAATATGTTGGAAATAGGCCAATCNAACTACGGAAGAGCAATTGGAAGGEST: gi|351028807|gb|FQ433237.1|FQ433237
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|349819475|gb|FQ413359.1|FQ413359
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCCATTGGAAEST: gi|351036139|gb|FQ463984.1|FQ463984
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAA
EST: TAGCTTTTCCAACCCTTCAGACCCTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAAEST: gi|351036156|gb|FQ464001.1|FQ464001
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAA
EST: AGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAAACG GCA-GTATGTTGGAAATAGGCCAATCAAACTACGGAAGEST: gi|33404798|gb|CF210425.1|CF210425
genomic: AGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAA-CGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAATG GCAAATATGTTGGAAATAGGCCAATCAAACTACGGAAGGGCAATTGGAAGGEST: gi|351016422|gb|FQ423849.1|FQ423849
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|351037773|gb|FQ464214.1|FQ464214
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAAGGC-AATCAAACTACGGAAGAEST: gi|349824137|gb|FQ417524.1|FQ417524
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATA-GGCCAATCAAACTACGGAAGA
EST: TAGCTTTTC-AACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAAATCAA-CTACGGAAGAGCAATTGGAAGEST: gi|349819739|gb|FQ402676.1|FQ402676
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAA-TCAAACTACGGAAGAGCAATTGGAAG
EST: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACG GCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGGEST: gi|351033445|gb|FQ462096.1|FQ462096
genomic: TAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATAGGCCAATCAAACTACGGAAGAGCAATTGGAAGG
EST: AGCTTTTCCAACC-TTCAGACCTTGCAGCAGCACTTAAAGAAAATGAACG GCAAGTATGTTGGAAATA
genomic: AGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAA-TGAACGgtatcacttc ... caattttcagGCAAGTATGTTGGAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTTTGGGTTTGTTAGCTTTTCCAACCCTTCAGACCTTGCAGCAGCACTTAAAGAAATGAACGgtatcacttctaatagatcttttacatggttctatcgtcttccacatttacagatttgcttcttgggcagtatgcataacatcaatgtaattggtgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatcaa