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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTGGTGTAGAAGGAGCAATGGAAAAGGGACGAAAATGGATCTTGGACCATGGGGGTGCAACTGCAATAACTTCTTGGGGGAAAATGTGGCTTTCTgtatgaactcaaaaacttttggcttgacctaaaatattaatttttttgcaactgtgagttgacatttgatttgcttctgatggccatag

Basic information

species Vitis vinifera
transcript Vv09s0018g00630.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g00630.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g04710.1 (Oryza sativa), 5'ss of exon 4
AGGTTTTGGTGTAGAAGGAGCAATGGAAAAGGGACGAAAATGGATCTTGGACCATGGGGGTGCAACTGCAATAACTTCTTGGGGGAAAATGTGGCTTTCTgtatgaactcaaaaactttt--------ggcttgacc----taa-aatattaatttttttgcaactgtgagttgacatttgatttgcttctgatggccatag
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GCCAGATAGCGGCGATGGAGCTATGGAGAAAGGACGAAAATGGATTTTAGACCATGGGGGAGCAACTTATATTACATCATGGGGCAAGTTTTGGCTTTCGgtagggagttaacacttcctctctctgtatcttgaccgctgtaataatctaacctggtttttaaatgtaacaactctttatattccctaatcatgtcag---