1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGTGGAGGAAATATGGCCAAAAGGTCACCAGAGACAACCCCTCTCCGAGAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggattgaaattgtccattgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcag
species | Vitis vinifera |
transcript | Vv09s0018g00240.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCEST: gi|349810369|gb|FQ401815.1|FQ401815
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
EST: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG GTGCAAAAAAGTGTTGAAAATCAATCTATATTGGTAEST: gi|161713939|gb|FC062887.1|FC062887
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTA
EST: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGCEST: gi|351054947|gb|FQ440286.1|FQ440286
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
EST: GAGTCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAG GTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
genomic: GAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaa ... ctttcttcagGTGCAAAGAAGTGTTGAAGATCAATCTATATTGGTAGCAACCTACGAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGTGGAGGAAATATGGCCAAAAGGTCACCAGAGACAACCCCTCTCCGAGAGCCTACTTCAAATGCTCTTTTGCTCCTAGCTGCCCTGTCAAGAAGAAGgtgagcctaaacttgacaatcccacctgtgattcgtctttttaggaacttgtgtcaaggtccggattgaaattgtccattgagttttgcttagcattctaagctgttttctgcaatttgtttcctttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG