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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttccacaatgcaaaatcattaaatagacttgaagtagtacattgcaaatatttctttttcaggttttagttgttgggtgggctatgttaagtca...

Basic information

species Vitis vinifera
transcript Vv09s0002g06460.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375149|gb|EC940110.1|EC940110
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110380681|gb|EC945965.1|EC945965
EST:     CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGC
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: gi|349823577|gb|FQ414987.1|FQ414987
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110378701|gb|EC943845.1|EC943845
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|30132619|gb|CB917958.1|CB917958
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110418470|gb|EC984627.1|EC984627
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110378310|gb|EC943434.1|EC943434
EST:     CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGC
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: gi|32267782|gb|CD716941.1|CD716941
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110382504|gb|EC946801.1|EC946801
EST:     CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGC
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: gi|26266752|gb|CA817815.1|CA817815
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTTCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|27586722|gb|CB009417.1|CB009417
EST:     CGGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACAT-CAAACTTTGATGAGCTGATGGCAGC
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGAC-TGCAAACTTTGATGAGCTGATGGCGGC
EST: gi|110369607|gb|EC933771.1|EC933771
EST:     AAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: AAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|32271236|gb|CD720395.1|CD720395
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110695756|gb|EE074133.1|EE074133
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|110392645|gb|EC958212.1|EC958212
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
EST: gi|71877464|gb|DT026519.1|DT026519
EST:     CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAG                         ATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT
genomic: CAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttcc ... tctgttctagATTGAGATATTACTCGGAAAGACTGCAAACTTTGATGAGCTGATGGCGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTGTCCAAAAAGCCAAGgtaagtttccacaatgcaaaatcattaaatagacttgaagtagtacattgcaaatatttctttttcaggttttagttgttgggtgggctatgttaagtca

- - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtggg